BAC Information

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BAC

Clone NameMSMg01-095O15
Chromosome12 (Build37)
Map Location 82,392,752 - 82,393,039
singlet/doubletsinglet
Overlap geneSlc8a3
Upstream geneWdr22, Exdl2, 2310002D06Rik, Galntl1, LOC100041715, Erh, Slc39a9, 3830431G21Rik, Gm1568, 4933426M11Rik, Sfrs5, Slc10a1, Smoc1, LOC100042143
Downstream geneLOC100042148, EG214321, Hspe1-ps2, Adam4, 1810020G14Rik, Synj2bp, Adam21, Med6, Ttc9, LOC100041821, Map3k9, Pcnx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095O15.T7 (MSMg01no095_o15.b1)MSMg01-095O15.TJ (MSMg01no095_o15.g1)
ACCAG312716AG312717
length711697
length of high quality
(start - end)
487 (25 - 511)291 (56 - 346)
definitionCHROMAT_FILE: MSMg01no095_o15.b1 PHD_FILE: MSMg01no095_o15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:05 2005CHROMAT_FILE: MSMg01no095_o15.g1 PHD_FILE: MSMg01no095_o15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTATACGACTCCTATACGGAGAGGATCCGCGGAATTCTGTTTA
GCTTTGTGTGCCCCCCCCCCCCTTTTAAACTTGGGTTATTTGGGATGCTG
GTATCTAACTTTCTGAGTTCTTTGTAAATTTTGGATATTAGCCCTTAGTC
AGATGTAGAGTTGGTGAAGATCCTTTTCCAGTCTGTAGGTTGCCATTTTG
TTCTATTGACAGTATCCTTTGCATTACAGGAACTGTAGTTTTATGAGGTC
CCCTTTTTCAATTGTTGATCTTAAAGCCTGAGCCATTGGTGTTCTATTCA
GTAAATTGTCTTCTGTACCAGTGTGTTCAAGGGTATTTCCCACTTTCTCT
TTTATGCGATTTAGCGTATCCAGTTTCATGTTGAGGACTTGAGTTTTATG
CAGGGTGATAAATATGAATCTATTTGTATTCCTCTACATGTAAGACCAGT
CAAATCAGCATTTGTTGAAGATACTTTCTTTCTTCCATTGTATGGGTTTT
TTTTTTCCTTAATAAAAAAATCACGTGTCCATTATGTATGTGTATTTATT
ACTGGGTCATCAATTCTTTTGATCTATATGTCATGTGCACCATTACCTTC
TCAGTTTGCCTCCCCTTCTTCCGATATTAACATATTTCCCCCTATTACTT
CTTTTTTTTTCCTTTTTTATTTTTTCCCCCCTCCTTTTCTTTCTTCTCTC
CTGCTCCCCCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCAGACCCTACAGAGTGGTACTCGTTCCTGGTTCTGGTCCTCAGA
ACTGATAGAGTGATACATGACTGCAACTCCAGCACTAGCGTGTGAGGTGG
GCAGGGCAAGGAGACAGACCAGCAACACAAATCGGGAGGAGAGATAGCCA
TTGTCTTCTTCTCACATCATGCATGCATATACACCTGCACACACAAAAAC
ACCCCTATACCAATAAATACATCACGCACAACACACCAAAAAGGGAAAGG
TCTCTTAAAAGAGTCATGTATTAAAACTTAATTACCAATGATGTTTTTGT
GAATGACCGGATTTAGGGTATGTCAGAAAGTGTGGAGGGCAGGCCCTAAT
TAAGAAAAGTGAATGGTCACTGGGGGAGAGGTCTTTGAAGGCTCTATCTT
ATCCCTAACTCCTTCATTCTGTTTTACTTTCTCTGCTTTCTGCCCACTGT
GATGAGAGCAGTTGAATAGCATTTTATGTTCCTGCATTGCTTTCACTCTT
ACTTAAATACTCTATTGCTCCACCTTTATAATTCATTGCCTGAAAACTTA
TGGATTCACTCCCCTTCCACACCCCCGGTTCAACGCTCCTCGTCCTATAC
CACACCCGCCCACATCACTTCTCATTCATTTTCATCCCTCTTCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_o15.g1 MSMg01no095_o15.g1 CHROMAT_FILE:
MSMg01no095_o15.g1 PHD_FILE: MSMg01no095_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:05 2005
         (291 letters)



>mm_chr12_82392552_82393242
          Length = 691

 Score =  542 bits (280), Expect = e-158
 Identities = 286/288 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagaccctacagagtggtactcgttcctggttctggtcctcagaactgatagagtgata 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagaccctacagagtggtactcgtccctggttctggtcctcagaactgatagagtgata 260

                                                                       
Query: 61  catgactgcaactccagcactagcgtgtgaggtgggcagggcaaggagacagaccagcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 catgactgcaactccagcactagcgtgtgaggtgggcagggcaagaagacagaccagcaa 320

                                                                       
Query: 121 cacaaatcgggaggagagatagccattgtcttcttctcacatcatgcatgcatatacacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacaaatcgggaggagagatagccattgtcttcttctcacatcatgcatgcatatacacc 380

                                                                       
Query: 181 tgcacacacaaaaacacccctataccaataaatacatcacgcacaacacaccaaaaaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcacacacaaaaacacccctataccaataaatacatcacgcacaacacaccaaaaaggg 440

                                                           
Query: 241 aaaggtctcttaaaagagtcatgtattaaaacttaattaccaatgatg 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaggtctcttaaaagagtcatgtattaaaacttaattaccaatgatg 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)