BAC Information

Click to search

BAC

Clone NameMSMg01-096L05
Chromosome12 (Build37)
Map Location 117,404,509 - 117,404,800
singlet/doubletsinglet
Overlap genenone
Upstream geneIgh, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328, Ighv1-68, LOC435329, EG668563, Ighv1-69, Ighv8-12, LOC619863, EG638634, EG619886, Ighv1-72, EG668575, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599, Zfp386, Vipr2, LOC676058
Downstream geneWdr60, LOC100042963, D12Ertd551e, D430020J02Rik, Ncapg2, Rnu7-ps1, Ptprn2, LOC627375
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096L05.T7 (MSMg01no096_l05.b1)MSMg01-096L05.TJ (MSMg01no096_l05.g1)
ACCAG313316AG313317
length779805
length of high quality
(start - end)
292 (127 - 418)254 (126 - 379)
definitionCHROMAT_FILE: MSMg01no096_l05.b1 PHD_FILE: MSMg01no096_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:09 2005CHROMAT_FILE: MSMg01no096_l05.g1 PHD_FILE: MSMg01no096_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTTTTTTNTTTTNTTTTTTTTTTTCCTTCCTTTTCCCCTAATCCA
NCATACTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGNAGAACCGC
GGAATTCAGAGAGGGGTTCCGGAAAGTGACATTCTGTACTTAGGAAGGGA
CTACAGTCATCTGAGCCACAGCAGACTTGGGAATCCCTCTGTAATAAAAA
CCCAGCTCTGGAAGCCAGAGGCTTCAGTTCTAGAGCACAGCAAGCAACAG
TGCCCATGCTGCTGTGTTCCAGGAGGGTGCCTGCGTTTCTTCACAACACT
TGCTTCCCTGCTTTGTTCAGTCTGGGCTGTGATCCCCAGCACCGTCATCC
AGTCTTCAGGCGAACACCCAAACCTGATGGATAGTAACAGGTAGTAGTTA
CGCTCTGAAACTACTCAAGATAAAAGAAACATGTACATACATGTTTTATT
CCTACAGGGCGGTAAGCTGCCTGCCCGTCTCCCCATTCCCTGTTGGAGTG
GCACCATAGCAACTCTTCGTGGTCCCCTTGCTTCTCTTGCTTCTCTTTAT
GCCAGCAGTAAGGCACCATCTCATTACCCTATGGGCTCAGCATTGCCTCC
TTGATTTCCCGAGATGTAAGGCATCTATAATTAAATCAGAAAGGTAATTC
TTCCCTCATCAGAGTGACTCCCTGGAACTCTGGCCAGTTTTTTTAAATGC
CAAATCATTTCCTATACAATTTTAATATGCCTTCCTAATGTTTTAGCCGA
TGCTTGTGCCCCTCTAATCATAAATACAG
TTTTTTTTTTTTTTTTCTTTTCTTTTCTTCCCCCCCCTCCCCCTACCACC
ANACTCGATGATAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTCCGAATCTAAGTCTCTGTGGCTGACCTGGAGA
AGGAAGGAAGAGAATTTTTAAGTCGGGCGGTGGTGGCGCACGCCGTTAAT
CCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCAAGACCAGC
CTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCC
TGTCTCGAAAAACCAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGATTTTGTTATCTCTTCCTTCTC
TTTCCAATCCTTAATATTTTTTCTCCCCCCCTCCCCCCTTTACCTCTTCT
TTTTCCTCTCCCTTTTCTTTCTCCTCCCCCCCCATCTCTATTCTTCTTTC
CCTTCCTTTTTTCTTCTCTCATCTTTCCCACACCTCTTTTCTCCCTCTCC
CTCTTTACCTTTTTTCTTTTCTGTTTTTCTCTTTTTCTCCCACTTTTCTT
CTTTTTCGCTTCCCCCAGTTCTATTTCTCTCCTCCTTTCCCCCCTCATCC
TCCCTTTCGTTTCCTCTTTTTCCCTCACCCCACCTTTTTCTGCTTTCTCT
CCTTTTTCTTCCCTTCCCCCCTTTTTTGCTCCCCCCTTCCTCCCTCTTAC
TTTCTCCTCACCCCTTCTCCCCCCCTTTATCCACCCCTTTTCTTTTTTTT
TCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_l05.b1 MSMg01no096_l05.b1 CHROMAT_FILE:
MSMg01no096_l05.b1 PHD_FILE: MSMg01no096_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:09 2005
         (292 letters)



>mm_chr12_117404309_117405000
          Length = 692

 Score =  557 bits (288), Expect = e-163
 Identities = 291/292 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgacattctgtacttaggaagggactacagtcatctgagccacagcagacttgggaatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgacattctgtacttaggaagggactacagtcatctgagccacagcagacttgggaatcc 260

                                                                       
Query: 61  ctctgtaataaaaacccagctctggaagccagaggcttcagttctagagcacagcaagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctgtaataaaaacccagctctggaagccagaggcttcagttctagagcacagcaagca 320

                                                                       
Query: 121 acagtgcccatgctgctgtgttccaggagggtgcctgcgtttcttcacaacacttgcttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagtgcccatgctgctgtgttccaggagggtgcctgcgtttcttcacaacacttgcttc 380

                                                                       
Query: 181 cctgctttgttcagtctgggctgtgatccccagcaccgtcatccagtcttcaggcgaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgctttgttcagtctgggctgtgatccccagcaccgtcatccagtcttcaggcgaaca 440

                                                               
Query: 241 cccaaacctgatggatagtaacaggtagtagttacgctctgaaactactcaa 292
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccaaacctgaaggatagtaacaggtagtagttacgctctgaaactactcaa 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)