BAC Information

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BAC

Clone NameMSMg01-097C03
Chromosome12 (Build37)
Map Location 86,199,600 - 86,199,729
singlet/doubletsinglet
Overlap geneLtbp2
Upstream geneLOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2
Downstream gene1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf, BC011209, 0610007P14Rik, Ttll5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097C03.T7 (MSMg01no097_c03.b1)MSMg01-097C03.TJ (MSMg01no097_c03.g1)
ACCAG313642AG313643
length778775
length of high quality
(start - end)
130 (135 - 264)216 (131 - 346)
definitionCHROMAT_FILE: MSMg01no097_c03.b1 PHD_FILE: MSMg01no097_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:46 2005CHROMAT_FILE: MSMg01no097_c03.g1 PHD_FILE: MSMg01no097_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGAAAAAGATAATATAAAACGCGAGGGGGTCTGCCACCCCNCGTCTTGGG
GGGGATCTATAATTGCGGCGCTAATAGAATCACTATTCCGCACTGCCGGG
GNAATNNTGGTTTTGCATAAAACTTCCAGNAGNGTCAGGANCCCACCCGG
TGGGGCTTCCTCAGTAGTCTGCTCACATTTAGCTCTGTATCCTCCTTGGT
GTTGTCAAGACAGCCTTGGCGAAGAAGGCAGAACCAGAACTGAGTGGTGG
AAAGAGATGCAGGGGACTTAGCTTGCCAGGCTGGGCGTCTCAGATTTCCA
GAGAGTGAAAGATGTTATTGTTTACACCAAGGGTGGGTCATCCTTGGGAC
GCATAGCAGGAAGGGAGGGTATATTTTTTTTCATCAAAAGCCACCTTTGA
GGTAGGGGTCAGAGGTTGAGCTGCAAGACCCTCCTCTCATGCATACCAGG
CTTTGGGTCTCTGCTGGATGGAAGGGGTGCCTCCACATGACTTCTCCATT
CCTTAAGCGAAAACCAGACTCAAGATGCGCCCCAGGCGTGTCTGCCTTCC
TCAGTGTTTGCCTGCTGAGCTGGCCCTAGTAGACAGAGCCTGTGGCTGAC
ATGGTGCTGGTGCCGCCCTGAACAAGCGCTCATGTGCAAAATTAGTGCAT
TTGGCATGAGGTACCATGCCTAAGCATTGGACCAAATCTTGAACTTGGTA
GATTTGTGCTTGGGAAACGCGTTGACCTTACATTCCCCCGCAATTATTTT
GCTTACCTGATAATAACGCACCCGAACA
AAAAAAGGCGAAAGGAGGAAGGGGCGTGGTGCCGCCAATCCCCCCCTTAC
NNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTATTTCAGAAATTCACTATGTAACCCAGATGGGCC
TCAAGTTTCTGATCCTCCTGCCTCAGTCTTCCAAGTGTTGAGGTTACAGG
TGCGCCACCCTGCTCGACTCTGCATACCCTATTTCTTTTATTTAAAAAAA
AAGTTTATGTTTTATTTTATGTGTATATGTTTTGCCCGCATGAATGTGTG
CCTCAGGTCTCCTGGAACTGGAATTAGAGACAGTTGTGATTTGTCATGTG
GGTGTTGGGAACGGAGGCTGGGTCCTCTGAAAGACCAAGATGTGCTTTTA
ACCACTGGGCCATCTGTCCATCCCCGTATACCCTATTAACAACCATGTTT
CATTTACTCTTTCTCACCCCTATCCTACATAATTAAGGTCACACACACAC
AAAAATATACCATTGCTAACTCCTGTCTTTCCTCTGAGGGGGAAGAGAAG
GAGGCGTCAGAAGTGGGCCACAGGAACCATTTGATGGATAGCTTTCCCCG
GATGCCACAGCAAGAACATGGTATCTGCCTGAGTGACTACCTAATCCTGA
ACCCCGCAGGCCCTGTCGTATGTGTGAAAACTCACCCATCTGGACATGGA
ACCCACACCGCCTTTTTGCCCTGCCCAATATCATGGCAGAATTCTCCCCC
AGAACATTCCTTGGAAAAAACAAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_c03.b1 MSMg01no097_c03.b1 CHROMAT_FILE:
MSMg01no097_c03.b1 PHD_FILE: MSMg01no097_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:46 2005
         (130 letters)



>mm_chr12_86199400_86199929
          Length = 530

 Score =  215 bits (111), Expect = 1e-60
 Identities = 125/130 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaggancccacccggtggggcttcctcagtagtctgctcacatttagctctgtatcctc 60
           |||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 330 tcaggaccccaccaggtggggcttcctcagtagcctgctcacatttagctctgtatcctc 271

                                                                       
Query: 61  cttggtgttgtcaagacagccttggcgaagaaggcagaaccagaactgagtggtggaaag 120
            |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 270 attggtgttgtcaagacagccttggcgaataaggcagaaccagaactgagtggtggaaag 211

                     
Query: 121 agatgcaggg 130
           ||||||||||
Sbjct: 210 agatgcaggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 130
Length of database: 530
Length adjustment: 8
Effective length of query: 122
Effective length of database: 522
Effective search space:    63684
Effective search space used:    63684
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)