BAC Information

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BAC

Clone NameMSMg01-097P08
Chromosome12 (Build37)
Map Location 83,812,560 - 83,813,011
singlet/doubletsinglet
Overlap geneRgs6
Upstream geneMap3k9, Pcnx, Sipa1l1, LOC432675, EG666911
Downstream geneDpf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097P08.T7 (MSMg01no097_p08.b1)MSMg01-097P08.TJ (MSMg01no097_p08.g1)
ACCAG314260AG314261
length673707
length of high quality
(start - end)
229 (46 - 274)451 (74 - 524)
definitionCHROMAT_FILE: MSMg01no097_p08.b1 PHD_FILE: MSMg01no097_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:53 2005CHROMAT_FILE: MSMg01no097_p08.g1 PHD_FILE: MSMg01no097_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACGATCCGCGGAATTCTGAGATATACCCAGGAAGGAGATTGGCCAGGAAG
ATGTGACAAGACTGACCCATGGTACCTGAGAACAAGTGACCAGCCACAAG
GCAGGATGAGGGTTAAAACAAATGGGTTATCTTTAGTTATGATCTAGTCA
CAGTAGTGCCTTGCTATATGGCCAAGGTACTTGTAAATATATTTTGAGTC
TCAGTCTTATTTCCTGGAGCATGGGGCTGGGAGGCAGTACTAACTTCAAC
ACATGGTGGCTTGAACAGCTGAGACTCTAGCAGCAGCTCCCTAGCAGGGT
TCTCTATCTAGCCTAAGTCCTCTTTAGACTTTGCACATCTCTTAGCTTTC
TGCCTATGCAAGGCCTCTTTGAACTTCTTCAATTCCATTGAAGTCTCCTT
AGAAATTTGTTTTTTAATTTTTAATTTTTTTAATTAGGTATTTTCTTCAT
TCACATTTCCAATGGTATCCCAAAAGTCCCCCATATCCTCCCCCATCACT
GCCCTACCCACCCATTCCCACTTCTTGGGCCTGGCGTTCCCCCGCCCTGA
GGCATATGAAGCCCTAAAAAATCTTGGAGTCCTTCTGAAACAAATCCCTC
CTCCCTCTCTCTTTGACCCATATGCGCCATACACATACATGGAAATAACT
GGGCTAACATGTGGGGGCGCGCG
GATGAACGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCACTTGACACTTGACCACCTATGGCTC
CTGAGAGGACAATCCTTTGGGGGACAGTTGATAATTTACGTTTTCCTTTA
GTGTGGTGGAAGATTTGTTTGGGACAGCAAGGAAAGAAAACTCTTGGTTT
TAAGAGTCAGAAAATTCTGGATTTGACCCAAACTATATTTAGATACTATT
TCCCCAGGCCAAGGGGCAATCATGGAGAAAACAAACAATAAATGCTAGAT
AGGATGCAGGGGAAAGGGAATTGATGTAGACTATCGGTGAGATGTAAATA
AATAGGGGCAGTCATCATGGAGATGAACGCACAGATTCTTCACAAAACAA
AAATAGAAGTACGATATGATTCAGCTGTAACAGTCCTGAGTATGTACCCA
AAGGGATGGAGGCCAGCACAAGCAGAGAGAGATAGCGGCATAATGTTCTC
AACAGCTGAGTTATAGAATCAGCCCAGGTGTCATCAACAAAGGAATGGAT
AAAGAAAATTCAATGTTTGTACACAATGGGATTTTACACAGTCATAAAGA
AGAGCGAGACTATGCCATTTTTCAGGAAGGCAGAAAGATCTGAGGCTCTT
GAGTCATTTCCACCTATATAAAAACCCCTTTTAAGGTCTTTTCGTTGGGC
AGGGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_p08.g1 MSMg01no097_p08.g1 CHROMAT_FILE:
MSMg01no097_p08.g1 PHD_FILE: MSMg01no097_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:53 2005
         (451 letters)



>mm_chr12_83812360_83813211
          Length = 852

 Score =  812 bits (420), Expect = 0.0
 Identities = 444/452 (98%), Gaps = 1/452 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacttgacacttgaccacctatggctcctgagagg-acaatcctttgggggacagttgat 59
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 cacttgacacttgaccacctatggctcctgagaggcacaatcctttgggggacagttgat 260

                                                                       
Query: 60  aatttacgttttcctttagtgtggtggaagatttgtttgggacagcaaggaaagaaaact 119
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 aatttacgttttcatttagtgtggtggaagatttgtttgggacagcaaggaaagaaaaat 320

                                                                       
Query: 120 cttggttttaagagtcagaaaattctggatttgacccaaactatatttagatactatttc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttggttttaagagtcagaaaattctggatttgacccaaactatatttagatactatttc 380

                                                                       
Query: 180 cccaggccaaggggcaatcatggagaaaacaaacaataaatgctagataggatgcagggg 239
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccaggccaaggggcaatcatgaagaaaacaaacaataaatgctagataggatgcagggg 440

                                                                       
Query: 240 aaagggaattgatgtagactatcggtgagatgtaaataaataggggcagtcatcatggag 299
           |||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||
Sbjct: 441 aaagggaattgatgtagactattggtgagatgtaaataaataggggcagccgtcatggag 500

                                                                       
Query: 300 atgaacgcacagattcttcacaaaacaaaaatagaagtacgatatgattcagctgtaaca 359
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 atgaacgcacagattcttcacaaaacaaaaatagaagtatgatatgattcagctgtaaca 560

                                                                       
Query: 360 gtcctgagtatgtacccaaagggatggaggccagcacaagcagagagagatagcggcata 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtcctgagtatgtacccaaagggatggaggccagcacaagcagagagagatagcggcata 620

                                           
Query: 420 atgttctcaacagctgagttatagaatcagcc 451
           ||||||||||||||||||||||||||||||||
Sbjct: 621 atgttctcaacagctgagttatagaatcagcc 652


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 852
Length adjustment: 10
Effective length of query: 441
Effective length of database: 842
Effective search space:   371322
Effective search space used:   371322
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)