Query= MSMg01no098_c22.b1 MSMg01no098_c22.b1 CHROMAT_FILE:
MSMg01no098_c22.b1 PHD_FILE: MSMg01no098_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:12 2005
(229 letters)
>mm_chr12_85477172_85477801
Length = 630
Score = 366 bits (189), Expect = e-106
Identities = 216/225 (96%), Gaps = 3/225 (1%)
Strand = Plus / Plus
Query: 5 gaattctgtctcccc-agccctgagagtg-aaccctgaagtttaccaacgtgggaagtat 62
|||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtc-ccccaagccctgagagtgtaaccctgaagtttaccaacgtgggaagtat 263
Query: 63 ctgtgcttgcccctgacttcctgaagctggccgagctgccgtgcctggaggacctggtgt 122
|||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctgtacttgcagctgagttcctgaagctggccgagctgccgtgcctggaggacctggtgt 323
Query: 123 tcgtcggtaatcccctggaggagaaacactctgccgagggcaactggatcgatgaagcaa 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcgtcggtaatcccctggaggagaaacactctgccgagggcaactggatcgatgaagcaa 383
Query: 183 ccaagagagtacccaagctgataaagctggatggtgagtgtgacg 227
|||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 384 ccaagagagtgcccaagctgaaaaagctggatggtgagtgtgacg 428
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 630
Length adjustment: 9
Effective length of query: 220
Effective length of database: 621
Effective search space: 136620
Effective search space used: 136620
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no098_c22.g1 MSMg01no098_c22.g1 CHROMAT_FILE:
MSMg01no098_c22.g1 PHD_FILE: MSMg01no098_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:12 2005
(245 letters)
>mm_chr12_85644738_85645384
Length = 647
Score = 402 bits (208), Expect = e-117
Identities = 235/248 (94%), Gaps = 10/248 (4%)
Strand = Plus / Minus
Query: 1 aattcagggctagccaggcagacaagtgactgtgcctcaaaatataaaccc---caaaca 57
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 329 aattcagggctagccaggcagacaagtgactgtgcctcaaaatataaa--caaacaaaca 272
Query: 58 accttcttgaggaagaattaaga-tttttttttttaaatatgagtttgattttatgttgt 116
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 271 accttcttgaggaagaattaagattttttttttttaaatatgagtttgattttatgttgt 212
Query: 117 ttggtgcgggcaacgtagagcctcatccatgcttaacaagggctctcaccactgaactat 176
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 ttggtgcgggcaacgtagagcctcatccatgcttaacaagggctctcaccactgaactac 152
Query: 177 aacccaagacccctgtggtaatttgattataattagcccccataggcttatagggagtgg 236
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 151 aacccaagacccctgtggtagttt----ataattagcccccataggcttatagggagtgg 96
Query: 237 cactatta 244
|| |||||
Sbjct: 95 cattatta 88
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 647
Length adjustment: 9
Effective length of query: 236
Effective length of database: 638
Effective search space: 150568
Effective search space used: 150568
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
