BAC Information

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BAC

Clone NameMSMg01-099P05
Chromosome12 (Build37)
Map Location 98,343,494 - 98,344,097
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039664, EG628277
Downstream geneLOC382626, LOC100039743, LOC667732, LOC628351, LOC100039770, LOC667746
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099P05.T7 (MSMg01no099_p05.b1)MSMg01-099P05.TJ (MSMg01no099_p05.g1)
ACCAG315768AG315769
length7271,711
length of high quality
(start - end)
608 (46 - 653)---
definitionCHROMAT_FILE: MSMg01no099_p05.b1 PHD_FILE: MSMg01no099_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:39 2005CHROMAT_FILE: MSMg01no099_p05.g1 PHD_FILE: MSMg01no099_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATATTCAGTGCCCTCAAAAATATTTGACGAAATGAATAATGCTGT
CAGACTTAAGTAAAGAAAAAATAGAAAAAAAATCATTTGAATCAGACCAA
TTGAGAAAACATATTTTCATAAGAGTTTAAAGAGTTTGTATTTAAGGCAT
ATCAACTTTTTTGATTTTAGACTGTCAATCTAGAATAGTAATGAAGCCCA
CCATTCAAGCTTGCTCTTTGAATAGATCACAGGTATTTGTTTTAATACTT
GACAGGAATAAGCTGTAATAACTACTTTGAGTATAATTCCACTGTCTAGC
TTGATTGTATAACTCCTAAACAGCCTGAAGGAAGGTGAAAAATTTGATTA
TTTAACTATGTGAAATGTGAGTAGAAAAGCATTGCTGCTTTTATAAGAAA
CATCATTTTATGTCCTGTACCCTTGGAATATTTCTTAAAGATGGATTTAC
CCAAACTTCATTTTCAGAAAAAAATAAATGACATGAAGTACTTCATACAG
CAAAAGATAAACTGCATAACAACGAGTTCCCATGAATCATAGGAAAAAAG
AAAACATGGAGCAAAGCAAAGGTATAAGCTTTGATTTTAATCAAGACACT
AGTGGCACAATTTCAGAACATTCATCAAGTGCATTTTTCTTATGACTTAC
TACAAACGTTGTCTTTGATTTAAAGAN
CGCGTCTTCTTTTGTCGCTTGCGTTCTTCTCTTTCTCCGCCGCTGTTTGG
TGGCGGCCGCGTGATTTNTTTGCACGCCTCCNCNCCGCGTAGTTCTTGTT
ATGCTGCCCGGCGCAGCCGCGGCTATTTTCGCGGGCGCCGCTGTGCGCGC
TTTATCTCGGCCGCGGCCGCCGGGCCGTCCCTCCTATTCCTTGTGGCGGG
CGGGTCATATTCCGCGGCCGCGGCGGTGTTCGCGCCGACGCGTTGGCGCG
CGAACGACCGCCCGTGAGAGCGTATAAATAAATATAAGCTTTATCATAAG
AAGTGCCAGCTCAAGTTGATACATACAGCTCCGGAATAGATAAAAAAAAC
GCGCCAACGCCGAATTATAAGCTCGGAGCAATGTATTCGGCATCATACAC
CCGTCGTAACAGGCATGCGCCGACGGCGTGGAGCGTGATGATATTGATGT
ACGGACGCCAATGAAAGCGAGAATACACATAATAGCCGGCAAAGATAATA
TCAACGAGTGTGACATGTTCATCCATTGCACGTCACCTATACCTCCCGCT
ATGCCAATTCCGACTCCGGACCTCGTGTCGATAATAAGAATAACTACCCG
CGCAATACACGGTGCCCGCGAGTGTATCCTAACAGAAACGTACGCTGAAG
ACATATCCTGCCGAATATGGTAGCACGGAATTCGTATACAGTAACTCAGT
ATTACCGCGCGATAGACAGGTGTGACGCANACAAACAANAATAGATATCA
GGGGCCGTCGCGCTCCGTACTCGTTGTTGTCCCCATNACACACCGATCTT
TATCTCGGCATCCGAGCCTAACACTCTGTTGTCGGAGANGTGCGCGGGTG
TTAATGCTGGCACGTAACACGCGCAACAGACACAGCTATCGCACTATATA
TTATAATTATACACGCACGCATACGCAAACCAAATTATAAGATAACGCTA
TAGAAGGCGCACCGCCTACTCCGCGCNCGCATATTTATAACTGTACCACC
TACACCGTATATATATATGACGACATATAANTATATAATGAACGAATATG
AGCCGCGCTGTTGCTGCGCTCGCGCGCTTGATANANATATTATGATCGGG
GTCGGCACTGACATGAACGAGTTGCCGTACGTCGTCTCTCATCTGCGTCA
GTCGCTCGGAAGGAACTATCGGCATATATATATGGCGGCGCGGTAGAGTG
GACGAGACAACGATATATCATTATTTATTCGCGTGTCCGTGATATAATAC
ACGATCGACAGCACGGCGCCTCACAACAGACTGTGTACTTATTTCGATAC
GACACTCTCTGTCTATCTACACAGTACAATGTAGATATTACATCGTGCTC
CTCACAGACGTCCCGCATAAATNACCATAGAGTGTAATAGAACGACTAAT
AGCAACACCACACACGCACGCCTCGCGATATATCGACCAACATCGCATTA
TATATCCATTAATATCATGACCGNCCGCTCCACATCATTTACTCATGAGA
CAACGCTCGCCACATCCACATATATAGACACAGTCATATAATAGATATAC
TGATATAGCACCCGACTGCGATCGAGTGTATATGTATCGCTCACCTCTCA
TCCTATAGTACTGACTCCTATACTCTGACGATATACAGGCGACACTGAGC
GTACATCTGTCGACNCTCATGCACTCGTCTAATGATGCTATATCGATCGC
ATCGCGGAGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_p05.b1 MSMg01no099_p05.b1 CHROMAT_FILE:
MSMg01no099_p05.b1 PHD_FILE: MSMg01no099_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:39 2005
         (608 letters)



>mm_chr12_98343290_98344297
          Length = 1008

 Score = 1100 bits (569), Expect = 0.0
 Identities = 596/605 (98%), Gaps = 2/605 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatattcagtgccctcaaaaatatttgacgaaatgaataatgctgtcagacttaa 64
           ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 808 gaattcatattcagtgctctcaaaaatatttgacgaaatgattaatgctgtcagacttaa 749

                                                                       
Query: 65  gtaaagaaaaaatagaaaaaaaatcatttgaatcagaccaattgagaaaacatattttca 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 gtaaagaaaaaatag-aaaaaaatcatttgaatcagaccaattgagaaaacatattttca 690

                                                                       
Query: 125 taagagtttaaagagtttgtatttaaggcatatcaacttttttgattttagactgtcaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 taagagtttaaagagtttgtatttaaggcatatcaacttttttgattttagactgtcaat 630

                                                                       
Query: 185 ctagaatagtaatgaagcccaccattcaagcttgctctttgaatagatcacaggtatttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ctagaatagtaatgaagcccaccattcaagcttgctctttgaatagatcacaggtatttg 570

                                                                       
Query: 245 ttttaatacttgacaggaataagctgtaataactactttgagtataattccactgtctag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ttttaatacttgacaggaataagctgtaataactactttgagtataattccactgtctag 510

                                                                       
Query: 305 cttgattgtataactcctaaacagcctgaaggaaggtgaaaaatttgattatttaactat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 cttgattgtataactcctaaacagcctgaaggaaggtgaaaaatttgattatttaactat 450

                                                                       
Query: 365 gtgaaatgtgagtagaaaagcattgctgcttttataagaaacatcattttatgtcctgta 424
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gtgaaatgtgagtagaaaaacattgctgcttttataagaaacatcattttatgtcctgta 390

                                                                       
Query: 425 cccttggaatatttcttaaagatggatttacccaaacttcattttcagaaaaaaataaat 484
            ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tccttggaatatttattaaagatggatttacccaaacttcattttcagaaaaaaataaat 330

                                                                       
Query: 485 gacatgaagtacttcatacagcaaaagataaactgcataacaacgagttcccatgaatca 544
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 329 gacatgaagtacttcatacagcaaaagttaaactgcataacaacgagttcccatgaatca 270

                                                                       
Query: 545 taggaaaaaa-gaaaacatggagcaaagcaaaggtataagctttgattttaatcaagaca 603
           |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 269 taggaaaaaaagaaaacatgaagcaaagcaaaggtataagctttgattttaatcaagaca 210

                
Query: 604 ctagt 608
           |||||
Sbjct: 209 ctagt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space:   596804
Effective search space used:   596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)