BAC Information

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BAC

Clone NameMSMg01-100D20
Chromosome12 (Build37)
Map Location 90,368,028 - 90,368,169
singlet/doubletsinglet
Overlap geneNrxn3
Upstream geneLOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1, LOC100039261, EG666915
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100D20.T7 (MSMg01no100_d20.b1)MSMg01-100D20.TJ (MSMg01no100_d20.g1)
ACCAG315989AG315990
length692686
length of high quality
(start - end)
142 (346 - 487)---
definitionCHROMAT_FILE: MSMg01no100_d20.b1 PHD_FILE: MSMg01no100_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:02 2005CHROMAT_FILE: MSMg01no100_d20.g1 PHD_FILE: MSMg01no100_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATGT
GTCTCAAACTTCCTCTCGCATATACGGTCTCTCGAGCAAAGTGCAGACTT
GTGGTGCATTTATGATATGGACCTACAGGAATCAGTATTGACTACATACA
CCTCTGCATATTGTCCTTACTAACCATACCCTGCGATTCGACACAGCTCT
GTTGTGCCTCCAGAAGCACCCCAGAGACCTTGTCCTTCATACTTCTGCAG
GCAACTGAATCTTGTAGGGAGGCACACCCTGGATGCTGCCTCTGCTGTGG
CCACATTTAAACTGTTCTGCATTACCTCACTAGCAGCCAATCAGCGTCTC
CCGAGCCTCAGCACACATGCTCCCCTCTGCCACAGACATTGCCTCATGTC
ACTCTCTGTCCCTGGAGCCTCTACTGCAGTGACCAAGAACCCACTCTGGG
TGGGTGGCACAGGAGAGGTGGGAGTAAAAAGGCTGGATGTCAAAGCCACA
GGCAACAGTGGTTTCTCCCTGAAGGCTCTTCTCCATCCCACGGGAGTCCG
GCATGCTCACAATGCGTGCTCTGTTCACCTGCCCCCCCCCCATTCAGATA
CCATGGGCAGGGTGGGTAGCAAGAGAGTATATCATGCTCCATGTCATACT
GCTCCCCCTTTTTTAATACCTTGTCTGCCGCGCCCCAATCTG
GATGAAGTGGGAGGCCTGGCGGCGCCTTTCAAAGACTTTAGGTGACCTAT
AGATTGCACGCGGAATCTTTCCTCATTGATTATGCACATTTCTGTTTCTC
TGGTTCCTTACGTGACTTTTTCCATATAGAATCTGGAGGATACTTGTTGG
AGCGCGATTTTTAAATCACTCTCACTTGCGCTCTGAAGAATTCCGTTTTG
GTAGTCATTTACTTTATCGTTCACGATCTTAGGCTAGGGACGATCCTGGC
TTCGTACATGCTTATTGACACGGGCTATGCTTGATATTATTTATTTACTT
CTGGGCTGTGTTGGCTCATGAAAAACAAGAACAAATACTTTTGTTAGATG
TCGGTCATTTTTGTGGTAAACCAAACATTTGTCCTTAAGTTTAATGATTA
TGTTACTGCTAGATATTTGATCTGTCTGCTATATTTGAAATGTGAGATAA
CATGGCAAATACTTAGGACCTGTGTTTGATTACTAGGACCCACATAATGG
AAACAATTGTCTGACATTTCTCCTCCAGGAGATTAAATATGTCATCTATA
CTCTGAGTTCCATGCCTACATGTGATGAACCTGCCCATACCCAATCAACC
CCCCCCGCCCGTGCCCATGCACACCTAGTACTTTATATACTCTCCAACGA
GGAAGAGAAATTGGGACACCGGCCTCTGGGATCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_d20.b1 MSMg01no100_d20.b1 CHROMAT_FILE:
MSMg01no100_d20.b1 PHD_FILE: MSMg01no100_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:02 2005
         (142 letters)



>mm_chr12_90367828_90368369
          Length = 542

 Score =  275 bits (142), Expect = 1e-78
 Identities = 142/142 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtctcccgagcctcagcacacatgctcccctctgccacagacattgcctcatgtcactct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gtctcccgagcctcagcacacatgctcccctctgccacagacattgcctcatgtcactct 283

                                                                       
Query: 61  ctgtccctggagcctctactgcagtgaccaagaacccactctgggtgggtggcacaggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ctgtccctggagcctctactgcagtgaccaagaacccactctgggtgggtggcacaggag 223

                                 
Query: 121 aggtgggagtaaaaaggctgga 142
           ||||||||||||||||||||||
Sbjct: 222 aggtgggagtaaaaaggctgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 142
Length of database: 542
Length adjustment: 8
Effective length of query: 134
Effective length of database: 534
Effective search space:    71556
Effective search space used:    71556
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)