BAC Information

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BAC

Clone NameMSMg01-100P09
Chromosome12 (Build37)
Map Location 30,305,147 - 30,305,441
singlet/doubletsinglet
Overlap geneMyt1l
Upstream geneColec11, Rps7, Rnaseh1, Adi1, Ttc15, Tssc1, 4833405L11Rik, LOC629608, LOC100043496
Downstream genePxdn, Tpo, Sntg2, Tmem18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100P09.T7 (MSMg01no100_p09.b1)MSMg01-100P09.TJ (MSMg01no100_p09.g1)
ACCAG316501AG316502
length831724
length of high quality
(start - end)
52 (130 - 181)295 (74 - 368)
definitionCHROMAT_FILE: MSMg01no100_p09.b1 PHD_FILE: MSMg01no100_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:00 2005CHROMAT_FILE: MSMg01no100_p09.g1 PHD_FILE: MSMg01no100_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTNNTTTTNNNNNNNNNNCCCCCCTTTNCCTTTTTTCCNNCCCTACC
CCCNGCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCACTTTTCCTATTTACGGCAGCTTTAATTATTCTCTTTT
GTATACCAGTGCATGCAGGACCAATATTAACATGTGTGCATGCGTGTGCA
CAACTTTGTGGCTGGTACAGTGCATCATATGTTTTTATGCCTATATGTGT
GAATATGTCTGTGCGCATGCGCCCCTCTTACCTCTTCTCCCATCTATCTC
CAATAAACGCCTCCTCTCATCCTTGTTGCGATCCCCTCTCTGATGCCCTT
TCCACCTCCTATGCCCCTTCTCCCCTTTTTTTTCTCCCCCATCCTCCCTT
TCTCCCCTACCACGTCCCCTCCCCTCTCCTTCCCCCCCCCGCCCCCCTCC
CCCCTTTCCCCCCCTCCCTTCCCCCCCCCCCCGCGCCGCAACTCCCCCAT
TTTTTTTTCCCTCCCCCCTTCCCTTACGCGCTCCTCATCCAACCTTCGCT
CTCTTTTTTCCTCTCCCCCTCCCACTCTACCCTATAAACCCCACCCCCCC
TCCTAACCCTCCCCCTTCCCCCACCCCACTCTCTTACCCACCTTCCTTTC
CTTTTTTTCCCCCTTCCCTTCCCTCCTCTCCTCCCCCTCTCCCATACTCC
CCACCTCTCCCTCCTCTCACACCCCCCTTCCCTCCACACCCCCCCCTTCC
CCCCATTCTCCTCCTCACTCATACACCCACCATATGTCCCCCTCCTCTTC
CCCTCCCCTCTTTTTACTTCTCCTCCTACTA
CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGAAGACAGTGCTATTTTATATTAAAA
ATATTTATATAAGTTTGCTTAAAAAATAGTTCTTCCAAAATAAAAGCAAA
GGAGAGGTGTCTCCCAAAACAAGAATGATGAAGAACTGGCACCAACAGAT
CTGATCTAGCGAAATCATCAAAGATTTTCTATTAAAAAGGAAAATTATAG
GTGTAATTCAGAGAAGCGTGAAGAAATAGAGTATTGCCCCAATTGAACAA
GAAGGTGATCATCTGACAAATAATATGAGCATCTCACGAGCTTTAATGCA
TGTGAGGAAGATAACCAGCCGCAACAAATGAGCGTCTGTGCTCCTGGATG
CATCCCATCCCTCACAGTCACACACAGACGGGAGAAGCTGCAGGCAACGT
CTTGGAAAGCTGCTGCTCCTGGGAAGCAGCTGAGCCACTTTTAATGTCAA
GTGTTAATCGGTCTAGAGTGTAGGCTATTATCTTAGCATGACAGATAAAC
AGGGTCAAAGAATGTGTAGCCAGCTTGAAACAGACAATCTAACAATCAAA
CTTATGATAAAAGTCCTAGAAGAGAGGAGTGATGGCCAACAACGAATATC
AACCACCTAAATGCCGACATTCTAGACCCCCNGCTGAGGGCTGATGGAGG
CTTCCCCTTGCAAACCTGATGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_p09.g1 MSMg01no100_p09.g1 CHROMAT_FILE:
MSMg01no100_p09.g1 PHD_FILE: MSMg01no100_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:00 2005
         (295 letters)



>mm_chr12_30304908_30305602
          Length = 695

 Score =  571 bits (295), Expect = e-167
 Identities = 295/295 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaagacagtgctattttatattaaaaatatttatataagtttgcttaaaaaatagttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 agaagacagtgctattttatattaaaaatatttatataagtttgcttaaaaaatagttct 475

                                                                       
Query: 61  tccaaaataaaagcaaaggagaggtgtctcccaaaacaagaatgatgaagaactggcacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tccaaaataaaagcaaaggagaggtgtctcccaaaacaagaatgatgaagaactggcacc 415

                                                                       
Query: 121 aacagatctgatctagcgaaatcatcaaagattttctattaaaaaggaaaattataggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 aacagatctgatctagcgaaatcatcaaagattttctattaaaaaggaaaattataggtg 355

                                                                       
Query: 181 taattcagagaagcgtgaagaaatagagtattgccccaattgaacaagaaggtgatcatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 taattcagagaagcgtgaagaaatagagtattgccccaattgaacaagaaggtgatcatc 295

                                                                  
Query: 241 tgacaaataatatgagcatctcacgagctttaatgcatgtgaggaagataaccag 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tgacaaataatatgagcatctcacgagctttaatgcatgtgaggaagataaccag 240


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)