BAC Information

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BAC

Clone NameMSMg01-102C01
Chromosome12 (Build37)
Map Location 98,578,960 - 98,579,376
singlet/doubletsinglet
Overlap genenone
Upstream geneEG628277
Downstream geneLOC382626, LOC100039743, LOC667732, LOC628351, LOC100039770, LOC667746, Galc, Gpr65
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102C01.T7 (MSMg01no102_c01.b1)MSMg01-102C01.TJ (MSMg01no102_c01.g1)
ACCAG317359AG317360
length726714
length of high quality
(start - end)
453 (65 - 517)415 (70 - 484)
definitionCHROMAT_FILE: MSMg01no102_c01.b1 PHD_FILE: MSMg01no102_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:37 2005CHROMAT_FILE: MSMg01no102_c01.g1 PHD_FILE: MSMg01no102_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCCTGGTTCNNNNCGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCGCGGAATTCTCTGTTTATCTCCGTATCCTGTTTTT
TAATTGGGTTATTGGTGTCTAACTTCTTGAATTCTTTATAAATTTTGGGT
GTTATCTTTCTATCAGTCCCTCTATTGAGGTAGGGAACAGGAAGAGTGGG
AGGATGGTGAGAGGAATAGAGGGTTTCAGGATAAGGTGTATGGAAGGATA
GGAGATACAGCTAGATGACCATGAAAATGAATGGAAATCTGCAAGTGACA
GGTGAGTAGTGAGGAGGTGGGGGACATCTCTAGGATGAGACAGATACTTG
GGATTAGGGATATGTCCAAGAATAAGTGGGGGTGACCTTAACTGTGACTC
ACAACATTGGGCATATGGAATGGGAAAAGCCAACCTCCTTTAGCTAGGCA
GGAACACCAGTAGAACCATAGAGACATCAACCCATCCACAAAACTTTCAT
CCCCAAATTCCTTCAGTCTATAAGAAATGCAGGGATGGGGGACAGAGCAG
AGCATGGAATGGACAACCAATAACTGACTCAACTTGAGATCCATTCCATG
GTCAAGTTCCAATCCCTGACAATATGATACTCTGTTATGATTGCAGACAA
GAGCATACTGTTCCTTGAGAGGCTCCCACCTGCTCATGACTCAGACTGAT
ACATATCTCCTCTTCTTTATAATGAA
TAAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTACTGAATTTTGGAGAAAGTAAATTCGGC
TACAAAGGATTACAATAACTGCCATTCTTCACATTGCAGAGGTTTCCTGT
AATTTTTGTTTTCAAAAGTTGATTCCATTCCATCCACAAATGTAGATGTA
ATCTAATGATTTATGCATGGATTATGAAGCTGGGTGTCATACTTATTTGA
CTCTTTCAGCCTAGAGTAAAGATAAATGGTGACATTTATCAAAAAATAAT
TGCACAAAGGTCTTGTTGCATAGCAATGGAAAATCATGCCTCGGCAAATG
CAATATATGTTTAAAGGGAAAAAATACTACTTAAGAGTAGTTAATGGAAT
CTTCTGGTATGAGCTTGGCTGAAAGTTTTTTTTTCCTTTGTAAGGTTTTA
ACATAATAGGAAAACTTCTACCTCTGCCACTCCACAGAAAATGTGTCTGT
GAGAAATGAGGGGATCCTTAATGCTTCATGTGTATAGGAAGTACGCTGCT
CAAAAACCTATTTGATTTTTTCCCAAGTAAACATTGGCAAGCGCGTAAAT
CCCATCTGTAATAAACCCCTTAACTTAAAGAGAGGCGATTATCTACTGCT
CAACTACCATGTCTTCGTCCTTTAATGCTACGCTCATCTGGCTAAAAAGC
AAAATTCTCTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_c01.g1 MSMg01no102_c01.g1 CHROMAT_FILE:
MSMg01no102_c01.g1 PHD_FILE: MSMg01no102_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:37 2005
         (415 letters)



>mm_chr12_98578760_98579576
          Length = 817

 Score =  768 bits (397), Expect = 0.0
 Identities = 412/417 (98%), Gaps = 2/417 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttactgaattttggagaaagt-aaattcggctacaaaggattacaataactgccattct 59
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttactgaattttggagaaagttaaattcggctacaaaggattacaataactgccattct 260

                                                                       
Query: 60  tcacattgcagaggtttcctgtaatttttgttttcaaaagttgattccattccatccaca 119
           ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 tcacattgccgaggtttcctgtaatttttgttttaaaaagttgattccattccatccaca 320

                                                                       
Query: 120 aatgtagatgtaatctaatgatttatgcatggattatgaagctgggtgtcatacttattt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgtagatgtaatctaatgatttatgcatggattatgaagctgggtgtcatacttattt 380

                                                                       
Query: 180 gactctttcagcctagagtaaagataaatggtgacatttatcaaaaaataattgcacaaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gactctttcagcctagagtaaagataaatggtgacatttatcaaaaaataattgcacaaa 440

                                                                       
Query: 240 ggtcttgttgcatagcaatggaaaatcatgcctcggcaaatgcaatatatgtttaaaggg 299
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtcttgttgcagagcaatggaaaatcatgcctcggcaaatgcaatatatgtttaaaggg 500

                                                                       
Query: 300 aaaaaatactacttaagagtagttaatggaatcttctggtatgagcttggctgaaagttt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaaaatactacttaagagtagttaatggaatcttctggtatgagcttggctgaaagttt 560

                                                                    
Query: 360 tttttt-cctttgtaaggttttaacataataggaaaacttctacctctgccactcca 415
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttttttcctttgtaaggttttaacataataggaaaacttctacctctgccactcca 617


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 817
Length adjustment: 9
Effective length of query: 406
Effective length of database: 808
Effective search space:   328048
Effective search space used:   328048
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)