Query= MSMg01no103_n20.b1 MSMg01no103_n20.b1 CHROMAT_FILE:
MSMg01no103_n20.b1 PHD_FILE: MSMg01no103_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:55 2005
(537 letters)
>mm_chr12_45262384_45263320
Length = 937
Score = 828 bits (428), Expect = 0.0
Identities = 507/540 (93%), Gaps = 11/540 (2%)
Strand = Plus / Plus
Query: 6 ggaattcattcttttggcttggatggctgatagtatgttgtccatgtttctttggatggc 65
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ggaattcattcttttggattggatggctgatagtatgttgtccatgtttctttggatggc 254
Query: 66 cccacacccatgtgtatgtagacatcaccaattgggctcatgggttatataaagaaatag 125
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 255 cccacacccatgtgtatgtagacatcaccaattaggctcatgggttatataaagaaatag 314
Query: 126 gagccggtcagtggtggtgcatgcctttaatcccagcacttaggaggcagagacaggcag 185
||||||| ||||||||| ||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 315 gagccgggcagtggtggcgcacgcctttaatcccagcacttaggaggcaaagacaggcag 374
Query: 186 atctctgggttcaaggccagcctggtctatagagtgagttccatgacagccagagctaca 245
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 atctctgggttcgaggccagcctggtctatagagtgagttccatgacagccagagctaca 434
Query: 246 cggagaaaccctgtcttgaaaaaacaaacaaaacatatcat-----------aagaaaag 294
| ||||||| ||||||||||||||||||||||| | | | ||||||||
Sbjct: 435 cagagaaactctgtcttgaaaaaacaaacaaaaaaaagaaagaaaagaaaaaaagaaaag 494
Query: 295 aaatgggatattaaagtggaaagagatcttatgaaggagtttaaaggtattaggagtgca 354
|||| |||| ||||||||||||||||||||| ||||||||| ||||||||| || |||||
Sbjct: 495 aaataggatgttaaagtggaaagagatcttaggaaggagttcaaaggtattgggggtgca 554
Query: 355 taagatcaagacacattgcacatttgtaagattactaaagaatgaattaaagatattcta 414
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 555 taagatcaagacacattgcacatgtgtaagattactaaagaatgaattaaagatattcta 614
Query: 415 aaattaattcatacagaatcaagtttaataatgtacccttgaaggataatgacatgtgta 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 aaattaattcatacagaatcaagtttaataatgtacccttgaaggataatgacatgtgta 674
Query: 475 ctatagtgttactctcaatcaataaagagagaggccaaagactaactctgagggtatttt 534
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 675 ctatagtgttactctcaatcaataaagagagaggtcaaagactaactctgagggtatttt 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no103_n20.g1 MSMg01no103_n20.g1 CHROMAT_FILE:
MSMg01no103_n20.g1 PHD_FILE: MSMg01no103_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:55 2005
(609 letters)
>mm_chr12_45383346_45384354
Length = 1009
Score = 1147 bits (593), Expect = 0.0
Identities = 606/611 (99%), Gaps = 2/611 (0%)
Strand = Plus / Minus
Query: 1 tttcctgctgatttatcactatagtttttcagagactcgacggattgcttaacatttttt 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 802 tttcctgctgatttatcactatagtttttcagagactcgacggcttgcttaacatttttt 743
Query: 61 tgttttaaccatcccttatctgatacttttcttaatattcgagaacttggcttaaattga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tgttttaaccatcccttatctgatacttttcttaatattcgagaacttggcttaaattga 683
Query: 121 gctaaccgtgtaaccatttcattttgactgccaaaaatagcctttgaaactgaattcaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gctaaccgtgtaaccatttcattttgactgccaaaaatagcctttgaaactgaattcaaa 623
Query: 181 gtacttttaatacgggacatatgaatgctcacttttgtaagtcccttgggagcagaagtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gtacttttaatacgggacatatgaatgctcacttttgtaagtcccttgggagcagaagtg 563
Query: 241 ctaagtctcacaattccaaagtgtaagccatggttgcttggagagtgccagtgtttgctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ctaagtctcacaattccaaagtgtaagccatggttgcttggagagtgccagtgtttgctg 503
Query: 301 caatgtgcttcacttctattccatttacagcttttcttatttgcgtgaaactctctgtgc 360
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 502 caatgtgcttcacttctattccatttacagcttttcttacttgtgtgaaactctctgtgc 443
Query: 361 acattgacatggttcatgcgccaatactgtttagaacacacaaaatgcaattgtttgctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 acattgacatggttcatgcgccaatactgtttagaacacacaaaatgcaattgtttgctt 383
Query: 421 ctctgtttcccacaaagacttcttgcattattaaggaagtaaatatatatatctagagtc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ctctgtttcccacaaagacttcttgcattattaaggaagtaaatatatatatctagagtc 323
Query: 481 aaattaatagacataacttaaaaatcatttattttctatgtgacattctctcattccatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aaattaatagacataacttaaaaatcatttattttctatgtgacattctctcattccatt 263
Query: 541 cctgaatgcttcatttaggaaattccataattcatggtcttacctgaaatagtt--aaaa 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 262 cctgaatgcttcatttaggaaattccataattcatggtcttacctgaaatagttaaaaaa 203
Query: 599 aaaattaatta 609
|||||||||||
Sbjct: 202 aaaattaatta 192
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
