BAC Information

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BAC

Clone NameMSMg01-104O14
Chromosome12 (Build37)
Map Location 28,835,235 - 28,835,542
singlet/doubletsinglet
Overlap genenone
Upstream geneSox11, LOC100043009, LOC669327
Downstream gene1110015M06Rik, Allc, Colec11, Rps7, Rnaseh1, Adi1, Ttc15, Tssc1, 4833405L11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104O14.T7 (MSMg01no104_o14.b1)MSMg01-104O14.TJ (MSMg01no104_o14.g1)
ACCAG319404AG319405
length719721
length of high quality
(start - end)
308 (70 - 377)61 (150 - 210)
definitionCHROMAT_FILE: MSMg01no104_o14.b1 PHD_FILE: MSMg01no104_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:20 2005CHROMAT_FILE: MSMg01no104_o14.g1 PHD_FILE: MSMg01no104_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTCGCTTTGCCTCTCAAGGAACTGAATGAGGTCTCAGCACAAACAG
CAATAATTTCTCTGTTAAATTCATCTCCACCCTCAGCTTCTACAGCTCTA
TTACATATCACACATACACACGTGCACACATACACACGTTGTATGTATGT
TGAAGAATAACTCCACCCAGAGCCTTCTAACCCCAACAAGCTGATATATT
TTAAAGGACTGACAGCCCTTTAGATATAAGCACTTCTCCAAAATTATGTT
CATTTACATTTAAGGTATTTTTATTTTCTAACTAGATTTGGGCTCTTTTC
AGGAGCAACTGTTATTTATCTTTATAGAAACTACTTGCAAAATATATAGA
ACAGGAAGGGCGCCTGAAAAGGATCGCTTTCTCAATTATCTTTGAAATGC
TCAAGCATGGAAATATTTACTGTATTTAAATGCACTGTTAATTAGCATGA
CGCTGTTTTAATTCAATCTTCATTTTGAGAGCAAGTTTTAGAAAAAAGGT
CGAGTCCCATCTTGACCGTGCATAGAGTGTTAAGATCCCCCACTAGAGAT
ATACCTGTTTTAGAACTAAACTCACCTCCAAACCCCGCCTATTATGCCTC
TCACCTGCTCTGCATACCCCTCCCTTCCCCTCTGAATTGCATATCAACTC
ACCCCGCGCTCTATCTCCC
ATGATTGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCATAGAA
GCACCTGAAAAAATGTTCAACCTCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAA
AATTCAGGTGACAGCAGATGCTGGCGTGCATGTAGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGTATTGCAGGCTTGTACAACCACTCTGGAAATCAG
TCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACTGGAGGATCCAGCA
ATACCTCTCCTCGGCACTCATCCATAAGATGCCCCATTTGGTAACAACGA
CACCTGCTCCACTATGTCCATAGCAGCCTTTATTTATTATAGTCCGAAGC
TGCAAAGAACCTCATATGCCCCTCTTCAGATGAACGGATACCGACCATGT
GTTCTCTCTATCCCACGGATTACTATCCCATTATCCTCCGTATGAATTTT
ATGCTTTTCCCATTCTCATGCTTGTTTTTTTACCCTACTTTCTTGCGTGT
CTTTTCCTATTTTCCTTATGAATCCCCCTCCTTATCTACTCTTTTATTAC
TGTATTATATTCCCCATCCTCGCTTTTTTCCTATATCCTCCCAAACCCCT
CATTTCCCCTATTTTCACACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_o14.b1 MSMg01no104_o14.b1 CHROMAT_FILE:
MSMg01no104_o14.b1 PHD_FILE: MSMg01no104_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:20 2005
         (308 letters)



>mm_chr12_28835035_28835742
          Length = 708

 Score =  596 bits (308), Expect = e-175
 Identities = 308/308 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggaactgaatgaggtctcagcacaaacagcaataatttctctgttaaattcatctcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggaactgaatgaggtctcagcacaaacagcaataatttctctgttaaattcatctcca 260

                                                                       
Query: 61  ccctcagcttctacagctctattacatatcacacatacacacgtgcacacatacacacgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccctcagcttctacagctctattacatatcacacatacacacgtgcacacatacacacgt 320

                                                                       
Query: 121 tgtatgtatgttgaagaataactccacccagagccttctaaccccaacaagctgatatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtatgtatgttgaagaataactccacccagagccttctaaccccaacaagctgatatat 380

                                                                       
Query: 181 tttaaaggactgacagccctttagatataagcacttctccaaaattatgttcatttacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttaaaggactgacagccctttagatataagcacttctccaaaattatgttcatttacat 440

                                                                       
Query: 241 ttaaggtatttttattttctaactagatttgggctcttttcaggagcaactgttatttat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaaggtatttttattttctaactagatttgggctcttttcaggagcaactgttatttat 500

                   
Query: 301 ctttatag 308
           ||||||||
Sbjct: 501 ctttatag 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)