BAC Information

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BAC

Clone NameMSMg01-105H11
Chromosome12 (Build37)
Map Location 75,337,708 - 75,509,467
singlet/doubletdoublet
Overlap geneSyt16, 1700086L19Rik, Dbpht2, LOC671971
Upstream geneMnat1, Trmt5, Slc38a6, EG666356, Tmem30b, 2210039B01Rik, Prkch, EG666385, LOC100041489, Hif1a, EG277089, Snapc1
Downstream geneKcnh5, Rhoj
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105H11.T7 (MSMg01no105_h11.b1)MSMg01-105H11.TJ (MSMg01no105_h11.g1)
ACCAG319813AG319814
length717710
length of high quality
(start - end)
285 (77 - 361)237 (81 - 317)
definitionCHROMAT_FILE: MSMg01no105_h11.b1 PHD_FILE: MSMg01no105_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:06 2005CHROMAT_FILE: MSMg01no105_h11.g1 PHD_FILE: MSMg01no105_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,509,183 - 75,509,467)(75,337,708 - 75,337,944)
sequence
CTGTAAAGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTGAGTTTTCTTCTTTTAGAGCTAAACGCCTGCTCAC
ACCTCATGAGAACAGCACTATCTAAATGACCTCACTAAGTGCTTAATATG
TGAAGATCATTTGTGGAGCAAAATAAAAGGAAGAATGGTGAGGAAAACAG
AGAGAAGATAGTACATTCTACAGTGTGTTGTATAGCACATAAATTACATA
TTAACATTGTGAAGAAACTTAGCACACTATTAAATATAGGTACAAGCAGG
GTATGTAAGATTTCCAGAGTTAGGAGAGAAAATGCTCTGATTTCTTTGCT
CTTTGCCTTGTTCACAGCTAGTATTAATCAAAATGAATAATATCCATTCT
CCACCCTCCCCCCCAGTCTACCTGGTCATTAGTGAAGCTAACTCCTTTTA
AGCTCCAGCGGTAGGAATGTTCCTGAAGGTAATTGTATTTTATTAGTAGG
AAGAGTGCTTAGCTTATAACATCTTGTATTACGGTATCCCTCACCTCACA
CCTCTCTTTATCTACTTTACCGCCTCGCCGCTGACCATCTGATGTCCATC
ACTATAAACCCCTTATTTGCCAGGACTTCGCATCTGTGCCCAGCATTCCT
TTTCCATTTAAGACTCTTCGCTCCGATTCACTTGATGTCTTTAACTTAGC
TTCCCACCAACCTCCCC
NCCGATGATAGCGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGAGAAGAGTCAAAAAGAGGCCCTGC
AGTGTGAAGCCCAGGAGTGAGTGTAGCCACATCCTTTCTTGTCAGTGTCA
GCCCTGGGCTCTGTACTGAGGATACAGGCTGAATGGGGAGAAGGAGCCAT
CATGAAGGGATGTTGATGGAGGAAAATACCTCATTTATCAGCTACTGTTG
AATATGATTACATACCACATATACGTCTATGTGTTATGGACTAAGTGATG
GATACAGATTAAGAACTTTGGTACGGGTAGGTAAAAGTACTGTGAGAGAA
CCACAGTAGATGTTTCTATAGAAACACAAGGATATATGGCCTTTCTCCCA
AGGATGAAAATTTTTCATTGGCGTGTTTCTAACTTCTGGCCATCAAAGCC
TGTATGGCCCCTGTTGACGACCACTAGCTATTTTTCTTACAACTCATGCA
CCCCCGAACTTTGCGGGCTCTCACACATCCCCATGATTTTGCGTGAAATA
ATATATTCCCTTGCACTTGCCCCTCATTTGCTCCCTTCCACTGTTTTTGC
TCATTGTCACGCTGTCCCCCACCTTTCTACGATCCTCATCGACCTTTACC
CCGACTTACCTACGGCTAGCCCCTACCCCTCGTGCCCTCTACCGCACGCC
TCCTTGATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_h11.b1 MSMg01no105_h11.b1 CHROMAT_FILE:
MSMg01no105_h11.b1 PHD_FILE: MSMg01no105_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:06 2005
         (285 letters)



>mm_chr12_75508983_75509667
          Length = 685

 Score =  505 bits (261), Expect = e-147
 Identities = 279/285 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttagagctaaacgcctgctcacacctcatgagaacagcactatctaaatgacctcact 60
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 485 ttttagagctaaatgcctgctcacacctcatgagaacagcactatctaaatgaaatcact 426

                                                                       
Query: 61  aagtgcttaatatgtgaagatcatttgtggagcaaaataaaaggaagaatggtgaggaaa 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 425 aagtgcttaatatgtgaagatcatttgtggagcaaaagaaaaggaagaatggtgaggaaa 366

                                                                       
Query: 121 acagagagaagatagtacattctacagtgtgttgtatagcacataaattacatattaaca 180
           |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 365 acagagagaagatagtacattctacagtgtgttgtatatcccataaattacatattaaca 306

                                                                       
Query: 181 ttgtgaagaaacttagcacactattaaatataggtacaagcagggtatgtaagatttcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ttgtgaagaaacttagcacactattaaatataggtacaagcagggtatgtaagatttcca 246

                                                        
Query: 241 gagttaggagagaaaatgctctgatttctttgctctttgccttgt 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gagttaggagagaaaatgctctgatttctttgctctttgccttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no105_h11.g1 MSMg01no105_h11.g1 CHROMAT_FILE:
MSMg01no105_h11.g1 PHD_FILE: MSMg01no105_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:06 2005
         (237 letters)



>mm_chr12_75337508_75338144
          Length = 637

 Score =  451 bits (233), Expect = e-131
 Identities = 236/237 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagtcaaaaagaggccctgcagtgtgaagcccaggagtgagtgtagccacatcctttctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagtcaaaaagaggccctgcagtgtgaagcccaggagtgagtgtagccacatcctttctt 260

                                                                       
Query: 61  gtcagtgtcagccctgggctctgtactgaggatacaggctgaatggggagaaggagccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcagtgtcagccctgggctctgtactgaggatacaggctgaatggggagaaggagccat 320

                                                                       
Query: 121 catgaagggatgttgatggaggaaaatacctcatttatcagctactgttgaatatgatta 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 catgaagggatgttgatggaggataatacctcatttatcagctactgttgaatatgatta 380

                                                                    
Query: 181 cataccacatatacgtctatgtgttatggactaagtgatggatacagattaagaact 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cataccacatatacgtctatgtgttatggactaagtgatggatacagattaagaact 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)