BAC Information

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BAC

Clone NameMSMg01-106A03
Chromosome12 (Build37)
Map Location 93,740,498 - 93,741,085
singlet/doubletsinglet
Overlap genenone
Upstream geneTshr, Gtf2a1, Ston2, EG666955, LOC100039631, Sel1l, LOC100039367, EG432681, LOC667589, LOC100039387, LOC100039425, LOC628116
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106A03.T7 (MSMg01no106_a03.b1)MSMg01-106A03.TJ (MSMg01no106_a03.g1)
ACCAG320209AG320210
length7572,014
length of high quality
(start - end)
37 (123 - 159)588 (130 - 717)
definitionCHROMAT_FILE: MSMg01no106_a03.b1 PHD_FILE: MSMg01no106_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:50 2005CHROMAT_FILE: MSMg01no106_a03.g1 PHD_FILE: MSMg01no106_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTAATAAAAAAATTATAATTTTCGACCGCTAAACTACTACTATATTCAG
AGAATGCGCGGAATTCTCACCTGATTCCTACCAAATGGCTGACAAGCACC
TGAAAAAAATGTTCATCATCCTTAATCATTATGGAAATTCAAATCAAAAC
AACCCTGATATGTCACCTCACACCGGTCATAATGGCTAATATCATACATT
CAGGTGACATCCCATGCTGCTTACTATGTTTCAGAAAGACCAGCACTCCT
TCATTGCTTATGCACATTGCCAGACTTTTTAATTACTGCGGAAAACACCT
AAGCCTATTCTTCTTGACTATTGACCATCGTACTACTCTCCATCTTATAA
TGCAGCTTTTCCTTGTTTCGTCCCATATCTCTCTCACGTGCCCATCGCGT
AACACCGTTCTCTCTTTTCTTTACGTTTATACATCTTCCGTTACATTATT
CCTATTTTTTCGCCACCCCCCGGATCCCCCCATTCATCTTTACCCCGGTT
CCTCTATCTTCTGCTCCCATACTTTTTTTTATTATTATCCCATTTATCCT
TTTCTGGCCTCTCTATCACTCCTGCTCTTTACGGTCTGCTCGTCTCCTTT
TATTTTCTTCTCCTTACTCCGTTACTGTTTACCCTTTCCTTCTTTCTCCT
TTCCCTCCACCTCCCTATCTGGCTATTTATCCGTCTCACTTGTTTATTCT
TTTATTTCTTCACCGTCTTATATTTCGTTTAGGCCTTCCACTCTCAACTC
GCCTTTG
TTAAGAATTCCTATTCNTTTNAAGTATCGTCGACGNCGNNCGTCGAAXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNTGATACTATATGGAGT
ATCATGCACATTGCACTTGTATACTCTCTGATAAAAGCTATTTAGCCAAA
AGAAAGTAATACAACATGGATCTTTTCCAGTCTGAACAAAGAGAAGAATA
GTGGCTTGACTTTTCTTTCGGAAGTTAAGAACAAAACAGACAATAATCTA
TGAATTTTCAAGTGTGAACTGTTTTGTTTGTGTTTACTTTATAACAATTC
AAAATTTCTATAATTTGGTAAATAGATTTTTTTTAATTTATAACTTCCAA
TTCCAGTTTAACACCATAAGATGATATTTAAAAAAAAGATTGATTAGTGT
GACTTCAATTTACTATAATGGATGACTCCAGTGTGAAATATTTTGTTAAC
GGCCAGCATAAACAAAGCTGAGACCAGTGTCACCACATTCAAAATTTTAT
TTTACAGATGAGAATGGATAACAGATTGTTCAAGTGTTGTGGCTATCAAT
TATAATGCCTGATGTGTAGCACTTAATAATCTTTATCACTTACTTCTTTA
TGTTTCTTACCTTGTATTTTCCCTTGATCCATTCATTTTACAAGCTTTGG
AACTTAAAGCATTATAGTCAATATTATGAGACTGTATTCACAGCATTTGC
GCTTCTGATCTTACTCCCTATTAGGTTTATGTCAAAATTGAACTTACCCA
GAAAATATCTGATGTTCAAAGATTTAGATATTTGAGGTTGATCTATTCTG
CCCTTAACTTTACAGGTATACAGACTGTATTTCTAGTCACGGAGTTCTTA
AAAGGCCTGCCTTGGGAAATAAATAGATTAATTCCAGTAAAGTGGTTGAA
CCTGAGAAAGTGGGAAAAATGAAGTAAAATCTCCAGGATCCATATGCAAT
GTCCGAACCAAGGGTCCTTACTCAAATGAAAGCCCGGGGAAGCCAAAAAC
AAAGGGTCCTTGGGGTTTGCTAATTACCAGTTTTCCCCAGCATTTTTGAT
CCCCGGTTCAAGAAGAAAACGGTCAATATCACTTTTATTATTATATAATA
CTATTATATTCCTTTGGGCTGGGAAAGCAGTTTGTGAAATTTGGGTAAAG
GAAAAAAAAAAATCCCCCCCAGCTTCGGGACCCTAACCAATGGCAGATGT
CCCAACGACCCTCAAAATTCTTTAAAGGGTTTCTAACAGAAACGGGAAAA
AAGATTTCTGGTTCTCCAGGTCAAAAAAGGCAAAAGTCTAATGGTCAACT
GGTAACCTCTCCCCTCCCTCCTCTTTTCCCTCTCCTCACAAGAATATTTG
GGTTTCTCTCTTGTGGAGCGGCTCCATAAACATGTGGTCACCGGAAGCTT
TTATTCTAAACGTTATATTATTCCCATTAGTTCCCGCCTNTCCCTGAGAC
TCAATTTCCCTCTCCCCAAGAGTCCTCTAACAAGTCACGGCCTCTTGAAG
TCTTTAAAACAACCTTGTGGTCCTGGTTTCTGCGTATTAAATATATACCC
CTATTCACATTAGATCCATTCAATAAATTCTAGCTCCAACTTTCTCCTCT
TCNTCTATATCTACGGAGATCCAACTNTNNTNNTTTTTNANNTTCNNTNT
CTTATCCATTTACCTATCTTCTNCTATTCTTCTTTTCTNTAATTCTTCAT
ATACTTATTATTTACCATATTCACGTTCCTTTCATTTACTCTCCGTCTTT
CTTATTTGTCTCCTTATTCACTACTATATCACATTTTACTCTTTATCTCT
CCTCACATTCTCTCTCTACGTTATCTCATCTCTTTATCGTCTGCTCTATA
CATCTCTTTGTATACATACTTCTCAACACTACTCTCCTTCTTGCTCTACT
CTTATCTCTTCTTCCTCTTACTACTTAGGTCTCATTCTTCTACACTCTTT
CACGTCTTTCTTCTTCTCTTTATCTCTACTCTACTGTTCCTCTCCTTCTT
AAACGTTGCTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_a03.g1 MSMg01no106_a03.g1 CHROMAT_FILE:
MSMg01no106_a03.g1 PHD_FILE: MSMg01no106_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:50 2005
         (588 letters)



>mm_chr12_93740298_93741285
          Length = 988

 Score = 1062 bits (549), Expect = 0.0
 Identities = 579/589 (98%), Gaps = 2/589 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gataaaagctatttagccaaaagaaagtaatacaacatggatcttttccagtctgaacaa 60
           ||||||||| ||||||||||||||||||||||| |||| ||| |||||||||||||||||
Sbjct: 788 gataaaagcgatttagccaaaagaaagtaatacgacat-gattttttccagtctgaacaa 730

                                                                       
Query: 61  agagaagaatagtggcttgacttttctttcggaagttaagaacaaaacagacaataatct 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 729 agagaagaatagtggcttgacttttctttcagaagttaagaacaaaacagacaataatct 670

                                                                       
Query: 121 atgaattttcaagtgtgaactgttttgtttgtgtttactttataacaattcaaaatttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 atgaattttcaagtgtgaactgttttgtttgtgtttactttataacaattcaaaatttct 610

                                                                       
Query: 181 ataatttggtaaataga-ttttttttaatttataacttccaattccagtttaacaccata 239
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ataatttggtaaatagatttttttttaatttataacttccaattccagtttaacaccata 550

                                                                       
Query: 240 agatgatatttaaaaaaaagattgattagtgtgacttcaatttactataatggatgactc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 agatgatatttaaaaaaaagattgattagtgtgacttcaatttactataatggatgactc 490

                                                                       
Query: 300 cagtgtgaaatattttgttaacggccagcataaacaaagctgagaccagtgtcaccacat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 cagtgtgaaatattttgttaacggccagcataaacaaagctgagaccagtgtcaccacat 430

                                                                       
Query: 360 tcaaaattttattttacagatgagaatggataacagattgttcaagtgttgtggctatca 419
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 429 tcaaaattttattttacagatgagaatggataacagattgttaaagtgttgtggctatca 370

                                                                       
Query: 420 attataatgcctgatgtgtagcacttaataatctttatcacttacttctttatgtttctt 479
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 369 attataatgcctgatgtgtaggacttaataatctttatcacttacttctttatgtttctt 310

                                                                       
Query: 480 accttgtattttcccttgatccattcattttacaagctttggaacttaaagcattatagt 539
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 309 accttgtattttcccttgatccattcattttacaagctttagaacttaaagcattatagt 250

                                                            
Query: 540 caatattatgagactgtattcacagcatttgcgcttctgatcttactcc 588
           ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 249 caatattatgagactgtattcacagcatttgggcttctgatcttactcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)