Query= MSMg01no106_d16.b1 MSMg01no106_d16.b1 CHROMAT_FILE:
MSMg01no106_d16.b1 PHD_FILE: MSMg01no106_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:21 2005
(610 letters)
>mm_chr12_84715397_84716405
Length = 1009
Score = 1085 bits (561), Expect = 0.0
Identities = 598/613 (97%), Gaps = 7/613 (1%)
Strand = Plus / Plus
Query: 1 tcccagaaggaaaggattccaccccatgggtgacctttgcattaaagccacaggggggc- 59
||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 201 tcccagaaggaaaagattccaccccatgggtgacatttgcattaaagcca-tggggggcg 259
Query: 60 --ggggggagcagaaggaatagggacaggctggcagcaaatgactcattccgtggagttg 117
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 260 ggggggggagcagaaggaatagggacaggctggcagcaaatgactcattttgtggagttg 319
Query: 118 cgaccagtgtgccccaggctggagcaggcatggaccagcctcagccatcacctgtcttta 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cgaccagtgtgccccaggctggagcaggcatggaccagcctcagccatcacctgtcttta 379
Query: 178 ccagaccacgggggctagattaccaaggcatgattgatgtcttgggccggaggaagctgg 237
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccagaccacgggagctagattaccaaggcatgattgatgtcttgggccggaggaagctgg 439
Query: 238 caccagacaggttagagcgatgtcctcatcaagcgctgaccccaggccactaaagcctgc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 caccagacaggttagagcgatgtcctcatcaagcgctgaccccaggccactaaagcctgc 499
Query: 298 aatcagaaacagaaaggcgagacgttgctgggctcgggaaaagccttctagtctggaaca 357
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aatcagaaacagaaaggagagacgttgctgggctcgggaaaagccttctagtctggaaca 559
Query: 358 ccagctgctaggctctagagggcttcgtgaggggcgagaggtccctttttggtcacaaat 417
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 560 ccagctgctaggctctagagggcttcgtgagggtcgagaggtccctttttggtcacaaat 619
Query: 418 ggacagaggggtccagtccagctctaaaaactggatatccagggactttttttgagcatg 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ggacagaggggtccagtccagctctaaaaactggatatccagggactttttttgagcatg 679
Query: 478 tctatagggagatgaagtccagggccaggagggccctctgctcctcattcaacctcctgt 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 680 tctatagggagatgaagtccagggccaggagggccctctgctcctcattcaacct---gt 736
Query: 538 tccagagaacctggtcactggctcaacttcctgtcactgccgtgagatcatgctcaggtc 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tccagagaacctggtcactggctcaacttcctgtcactgccgtgagatcatgctcaggtc 796
Query: 598 cagccctctaagc 610
|||||||||||||
Sbjct: 797 cagccctctaagc 809
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1009
Length adjustment: 10
Effective length of query: 600
Effective length of database: 999
Effective search space: 599400
Effective search space used: 599400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no106_d16.g1 MSMg01no106_d16.g1 CHROMAT_FILE:
MSMg01no106_d16.g1 PHD_FILE: MSMg01no106_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:21 2005
(225 letters)
>mm_chr12_84752517_84753141
Length = 625
Score = 397 bits (205), Expect = e-115
Identities = 220/225 (97%)
Strand = Plus / Minus
Query: 1 gaacctgtgtggtagaagggtgggggtgggagtgtggggagccacagcgagtatggaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 425 gaacctgtgtggtagaagggtgggggtgggagtgtggggagccacagcgagcatggaatc 366
Query: 61 ctgaagagcctgcgaccgcacctgcctcccattctgctgtgactgcatctgtcgttggca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ctgaagagcctgcgaccgcacctgcctcccattctgctgtgactgcatctgtcgttggca 306
Query: 121 ggcctgtctggcgcagacctccctttggccttctggagcacacttgtagaaggttttgga 180
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 305 ggcctgtctggcgcggacctccctttggccttctggagcacacttggagaaggttttgga 246
Query: 181 tcctaacaactctctccttcccgtcccccagttgcctcagctcag 225
|||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 245 tcctaacaactccctcctccccgtcccccagttgcctcagctcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 625
Length adjustment: 9
Effective length of query: 216
Effective length of database: 616
Effective search space: 133056
Effective search space used: 133056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
