BAC Information

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BAC

Clone NameMSMg01-108F15
Chromosome12 (Build37)
Map Location 10,830,158 - 10,830,630
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382567, Nt5c1b, Rdh14, LOC238074
Downstream geneLOC100042308, EG668435, Kcns3, LOC628276, Msgn1, 5830483C08Rik, Smc6, Vsnl1, EG209550, LOC217390, LOC628327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108F15.T7 (MSMg01no108_f15.b1)MSMg01-108F15.TJ (MSMg01no108_f15.g1)
ACCAG321821AG321822
length704703
length of high quality
(start - end)
430 (86 - 515)473 (85 - 557)
definitionCHROMAT_FILE: MSMg01no108_f15.b1 PHD_FILE: MSMg01no108_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:11 2005CHROMAT_FILE: MSMg01no108_f15.g1 PHD_FILE: MSMg01no108_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCTGGCTTCGCTCTATAATTTGCGGCCGCTNTACGACNTCACTTCAAA
AGAGGATCCGCGGAATTCTTTGTTTCCCTCTGTAACCCCATTTTTATAGG
GTTATTTGATTTTCTGGAGTCCATTTTCTTGAGTTCTTTATATATGTTGG
ATATTAGTCCCCTATCTGATTTAGGATTGGTAAAGATCTTTTAATTTTTA
ATAGGGTTATTTGATTTTTTAGAGTCCATTTTCTTGACTTCTTTATGTGT
ATTGGATATTAGCCCTCTATCTGACTTAGGATTGGTAAAGATCCTTTCCC
AATCTGTTGGTAGCCTTTTTGTCTTATTGATAGTGTCTTTTGGGCAATGG
CCACTTATATTTGGCCCCAGAATAAACTATCTTTATTCCCTTTGATACCA
GGGTGTGTTTTTGGGTCAAGAGCATAACCATGGGATCAAAATTAAACTCA
TACTCTACTGCGCATGCTAGGTGAATGATTTTCATTCACTCCTTGTCTTA
GAGTTTCTCTTGCTGTGGTGAAACACTGTGGCAAAAGCAACATGGGGAGG
GAAGGTGTTGCAGTTGCCAATTAATCCTGCTCAAATGTACATGGTGGCAG
CAGTGAATATTCCTTTCTACCTGTCTCATTGGTCTGTATTACGAAATGTA
AGATTCACACTTGCAGCCTTATATTTTATTATGACTCAAACAGTTCAATT
CCCG
ATCGCTTNCGCTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCTTCCCTCTTCTA
CCCATGATCCAACAGGTGCTCTCTTCTCTCCCTTTGCCACAGTGGCTGAG
GACCCACAGAACAGTAGATAAGATGTGCTTCAGGCCAGACCATGCTGCTT
ACATGCTTCATTGGCTAGGAATAGCCAGGCTACATGGAAACCTGAAGACA
GATCCAAAAAGGGAATCCTGAAATGGTATAATTAGGGTTCACATTGCTCT
AAGCTCCATCTTTGACTCTTACAGAAGAAGCTATAAAAGCAAAGCCTAAG
ACCCACACCAGGAACATCAGTGCTATCAGAGAATTTTCTAGAAATAAAAA
TAATTTGAGGTCTTCATGTCAGACATGAAGAATTGAGAACTCTAGGGTAG
AACGCAGCAGTTGTATTTACACGACTCCTCCATGGGAATCTGATACTCAT
TGAAGGCTGAGAAACGCTGATGTCACTCCTCTAAATCTTAGCTTCTTCCC
TGGCAAGTAAGAGATAACAAAACCTAAACTTAAGAGCCTTATGAGGACGG
GTGAGAAGAGGAGTGTAAGGACCCTGCAGCAAAGTGCACACAAGGAATTG
CATCACTGTCTTCTCCCTCATAATGTTTTACAAGAAATAGGTATCTAACT
CAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_f15.g1 MSMg01no108_f15.g1 CHROMAT_FILE:
MSMg01no108_f15.g1 PHD_FILE: MSMg01no108_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:11 2005
         (473 letters)



>mm_chr12_10829958_10830830
          Length = 873

 Score =  832 bits (430), Expect = 0.0
 Identities = 463/474 (97%), Gaps = 2/474 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatcttccctcttctacccatgatccaacaggtgctctcttctctccctttgccacagtg 60
           |||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||
Sbjct: 201 aatcttccctcttctacccatgatccaaaaggtgctctcctctctccctttgcctcagtg 260

                                                                       
Query: 61  gctgaggacccacagaacagtagataagatgtgcttcaggccagaccatgctgcttacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 gctgaggacccacagaacagtagataagatgtgcttcaggccagaccatgctgctcacat 320

                                                                       
Query: 121 gcttcat-tggctaggaatagccaggctacatggaaacctgaagacagatccaaaaaggg 179
           ||||| | ||||| ||| ||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 321 gcttc-tctggctgggagtagccaggctacatgaaaacctgaagacagatccaaaacggg 379

                                                                       
Query: 180 aatcctgaaatggtataattagggttcacattgctctaagctccatctttgactcttaca 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aatcctgaaatggtataattagggttcacattgctctaagctccatctttgactcttaca 439

                                                                       
Query: 240 gaagaagctataaaagcaaagcctaagacccacaccaggaacatcagtgctatcagagaa 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gaagaagctataaaagcaaagcctaagacccacaccaggaacatcagtgctatcagagaa 499

                                                                       
Query: 300 ttttctagaaataaaaataatttgaggtcttcatgtcagacatgaagaattgagaactct 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttttctagaaataaaaataatttgaggtcttcatgtcagacatgaagaattgagaactct 559

                                                                       
Query: 360 agggtagaacgcagcagttgtatttacacgactcctccatgggaatctgatactcattga 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agggtagaacgcagcagttgtatttacacgactcctccatgggaatctgatactcattga 619

                                                                 
Query: 420 aggctgagaaacgctgatgtcactcctctaaatcttagcttcttccctggcaag 473
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 620 aggctgagaaacgctgatgtcactcctctaaaccttagcttcttccctggcaag 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)