BAC Information

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BAC

Clone NameMSMg01-110G11
Chromosome12 (Build37)
Map Location 105,126,288 - 105,126,632
singlet/doubletsinglet
Overlap genenone
Upstream geneCox8c, 9030205A07Rik, LOC667269, Prima1, EG544888, Asb2, Otub2, Ddx24, D12Ertd647e, Ifi27, 1810023F06Rik, 8430415E04Rik, Serpina10, Serpina6, Gm46, Serpina1f, EG435316, Serpina1b, Serpina1d, LOC667951, LOC628801, Serpina1a, LOC667954
Downstream geneSerpina1c, Serpina1e, Serpina11, Serpina9, Serpina12, Serpina4-ps1, Serpina5, Serpina3a, Serpina3b, Serpina3c, LOC435318, LOC628883, Serpina3f, LOC667997, Serpina3g, Serpina3h, EG628900, EG238395, Serpina3k, EG628916, Serpina3m, Serpina3n, Gsc, Dicer1, Clmn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110G11.T7 (MSMg01no110_g11.b1)MSMg01-110G11.TJ (MSMg01no110_g11.g1)
ACCAG323338AG323339
length713729
length of high quality
(start - end)
551 (80 - 630)495 (88 - 582)
definitionCHROMAT_FILE: MSMg01no110_g11.b1 PHD_FILE: MSMg01no110_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:59 2005CHROMAT_FILE: MSMg01no110_g11.g1 PHD_FILE: MSMg01no110_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:59 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NTCATAATTTGCGGCGCTATACGATCACTATTCGGAGAGATCCGCGGAAT
TCTTTGTTTACCTCTGAGCCCATTTTTAATGGTGTTATTTGCGGTTTCTC
AAATAATTGGACATAGTACTACTGAAGGATCCCACAATACCTCTCCTGGG
CATATATCCAGAAGATGTTAAAACTGGTAATAAAGACACATTCTCCACTA
TGTTCATAGCAGCCTTATTCGTAATAGCCAGAAACTGAAAAGAACACAGA
TGCCCCTCAACAGAGGAATGGATACAAAAAAATGTGGTATGATAAGAACT
TCAAGTCTCTGAAGAAAGAAATTTAAGAAGATCTCAGAAGATGGAAAGAT
CTCCCATGCTCATGGATTGGCAGGATCAACATTATAAAAATGGCTATCTT
GCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAATACCAACTAA
ATTCTTCAATGAATTAGAAAGAGCAATCTGCAAATTAACCTGGAATAACA
AAAAACCTAGGATAGCAAAAACTCTTCTCAAGGATAAAAGAACCTCTGGT
GGAATCACCATCCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATAAA
AAACTGCATGGTACTGGTATAGTGACAGACAATTAGACCAATGGAATAGA
ATTGAAGACCCAGAAATGAACCCACACACCTATGGCCACTTGATCTTCGA
CAAGGGAGCTAAA
NCAGCCTCCCNNNTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAAT
TCCGAATGGCTGAGAAGCACCTGAAAAAATGTTCAGCATCCTTAATCATC
AGGGAAATGCAAATCACAGCAACCCTGAGATTCCATCTCACACCAGTCAG
AATGACTAAGATCAAAAATTCAGGTGACAGCAGATCCTGGCAAGGATGTG
GAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTGTTT
GTTTCTGATGCGTGACAGGTTTACTTTGTTAACTTAACAGGATCTAGAGT
CACCTTGGAGTGATCCTGAGCCTGTCATTCAGGGAGGTCCTAGCTTAGGT
TAGCTGAGATGGGAAGTCCTGCCTAAATGTAGGTGGCTCTTTTCTATAAA
AGGGTGAGGGTGGTCACCTAGGAGACTGCAGAGTTCAGTCCTTACCATGA
AAAAGGAATTGAACCACTGGGAAAGACAGAAGACCAAACCACAGAGAAGG
AGAAACAACAGCTATGTATATATTTGGTGAGGGAAAAACCTAAGTATGGA
GATCAACTAAGCTAACAGTGACTTGGTGGTTTCATAGAGCCTCTGGGTCA
CCTCTTCTCCCCTTCTGCTCTTGCTTATATTCTTGCTCTTGAACCTTTTT
GCTGTTTTCTTCTCACAAAGATTTTAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_g11.g1 MSMg01no110_g11.g1 CHROMAT_FILE:
MSMg01no110_g11.g1 PHD_FILE: MSMg01no110_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:59 2005
         (495 letters)



>mm_chr12_105125738_105126632
          Length = 895

 Score =  667 bits (345), Expect = 0.0
 Identities = 345/345 (100%)
 Strand = Plus / Minus

                                                                       
Query: 148 tcctggcaaggatgtggagaaagaggaacactcctccattgttggtgggattgcaagctt 207
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 tcctggcaaggatgtggagaaagaggaacactcctccattgttggtgggattgcaagctt 836

                                                                       
Query: 208 gtgtttgtttctgatgcgtgacaggtttactttgttaacttaacaggatctagagtcacc 267
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 gtgtttgtttctgatgcgtgacaggtttactttgttaacttaacaggatctagagtcacc 776

                                                                       
Query: 268 ttggagtgatcctgagcctgtcattcagggaggtcctagcttaggttagctgagatggga 327
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 ttggagtgatcctgagcctgtcattcagggaggtcctagcttaggttagctgagatggga 716

                                                                       
Query: 328 agtcctgcctaaatgtaggtggctcttttctataaaagggtgagggtggtcacctaggag 387
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 agtcctgcctaaatgtaggtggctcttttctataaaagggtgagggtggtcacctaggag 656

                                                                       
Query: 388 actgcagagttcagtccttaccatgaaaaaggaattgaaccactgggaaagacagaagac 447
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 actgcagagttcagtccttaccatgaaaaaggaattgaaccactgggaaagacagaagac 596

                                                        
Query: 448 caaaccacagagaaggagaaacaacagctatgtatatatttggtg 492
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 caaaccacagagaaggagaaacaacagctatgtatatatttggtg 551


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)