BAC Information

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BAC

Clone NameMSMg01-110J24
Chromosome12 (Build37)
Map Location 83,852,681 - 83,922,923
singlet/doubletdoublet
Overlap geneRgs6
Upstream geneMap3k9, Pcnx, Sipa1l1, LOC432675, EG666911
Downstream geneDpf3, Wdr21, Zfyve1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110J24.T7 (MSMg01no110_j24.b1)MSMg01-110J24.TJ (MSMg01no110_j24.g1)
ACCAG323501AG323502
length707710
length of high quality
(start - end)		666 (42 - 707)286 (71 - 356)
definitionCHROMAT_FILE: MSMg01no110_j24.b1 PHD_FILE: MSMg01no110_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:16 2005CHROMAT_FILE: MSMg01no110_j24.g1 PHD_FILE: MSMg01no110_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,922,312 - 83,922,923)(83,852,681 - 83,852,965)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAATGCTTCCTAGATGAAAGATGAAGAATGTTGTTAACCTGGGTTTGGGA
GCACATGATGGTTAGTGACTGTCAAGTTGATCAAGTCTAGAACCATCTAG
AAGGCAAGCATCAGGCATGCCTGTGAGGGATCATCTAGGCTATGCTAACT
GATGTGTGAGGACCCATCCTGAAAGTAGATGGCACCATTCTGTGGGCTTA
GGTCCCGGGATGTGTAAAAGGAGAAAGCTAGCTGGACATTAACATCAACC
GCTCTGCCTCCTGACTGAAGAAATAATAGAACCAACTCCTTCAAGTTCTG
CAGCCAGGACTCCCATGAACTATGAGTTAAAATAATTCCTTTCTTCCTTA
AGTTGCTTTGTCAGGCTGTTTTAATCAAAGCAACAGGAAAAAGAACTAAG
AAGAGGTTACATCATTTTTATAGGATGAGAAAGCTAAGAAAGAGTATTTT
ATTAGAATCTGTATGTATATGTGCAAGTGCACGCGCACACACACACACAT
CTGTGAGGGTTCATACATGTCACAGCAAGTACACAGTGGTCAAACGACAA
CCTGCAGGAGTCAGTTCTCTCCCTCCACCATGAGAGACTGAGCAATAGAT
CTAAAGTCATTAGATCCAACCTTCACTCACTGAACCATCTTACCAGACCT
CCACCCC

GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTCTATGAAGGGCAGAAGCAAGGGGACATT
GCTGAGTGTCACTTGAGTGCTGGGACCCGCTAGTGCACAGTTAGGTGGGT
AGAGATGGATGGTTATGTGGAAACCTTGGGCCTTTCCCCAAGTCCTGTTG
GTTCCCTGGACAGTGACAGCTTGGCTGTGAGAGCGAAGCCTAGGTGACTC
CTGGATCAGGAGCTCTTGTCCTGGCTGAGGTCACCTTCCCTTTCCAGGGG
CTGAGGTGCCCTTAGCTTGAATGGACATTTTGGAAGGAGGGTGGAGGTCA
GCTCCTTGTTTGTGCACCCTGGCTTCATTCAGCTTGTGTGGAGCTCCAAG
CTGGCCTCGCCCCCCCATAACTGTCAATTGCATCTGAGGTTGCTCTGGGA
TTTACCGCCCCTTTCATATGTGCTGGATTCCCATGCACCCCATCCCATTC
CTTCCCACCCTATTTCAGGCCAGTCCAATCTAGGCAAGAGATTTTTACTA
TCATCTTTATTTTATATAGCAGCGCCACCCACACTCTAGATGCACACCAC
TGTTGATCCATTACCTTTTTTGCTTTCTCATCTTTCCCTTTTGCACCCCG
TTTTAGGTTCTCTATGGGCCCCCCTAAATTTTTTTTTTTCCTTCTTCCCT
CCCCCCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_j24.b1 MSMg01no110_j24.b1 CHROMAT_FILE:
MSMg01no110_j24.b1 PHD_FILE: MSMg01no110_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:16 2005
         (666 letters)



>mm_chr12_83921858_83922923
          Length = 1066

 Score = 1160 bits (600), Expect = 0.0
 Identities = 609/612 (99%)
 Strand = Plus / Minus

                                                                        
Query: 55   tgggagcacatgatggttagtgactgtcaagttgatcaagtctagaaccatctagaaggc 114
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 tgggagcacatgatggttagtgactgtcaagttgatcaagtctagaaccatctagaaggc 1007

                                                                        
Query: 115  aagcatcaggcatgcctgtgagggatcatctaggctatgctaactgatgtgtgaggaccc 174
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 aagcatcaggcatgcctgtgagggatcatctaggctatgctaactgatgtgtgaggaccc 947

                                                                        
Query: 175  atcctgaaagtagatggcaccattctgtgggcttaggtcccgggatgtgtaaaaggagaa 234
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 946  atcctgaaagtagatggcaccattctgtgggcttaggtcccggaatgtgtaaaaggagaa 887

                                                                        
Query: 235  agctagctggacattaacatcaaccgctctgcctcctgactgaagaaataatagaaccaa 294
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886  agctagctggacattaacatcaaccgctctgcctcctgactgaagaaataatagaaccaa 827

                                                                        
Query: 295  ctccttcaagttctgcagccaggactcccatgaactatgagttaaaataattcctttctt 354
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 826  ctccttcaagttctgcagccaggactcccatgaactatgagttaaaattattcctttctt 767

                                                                        
Query: 355  ccttaagttgctttgtcaggctgttttaatcaaagcaacaggaaaaagaactaagaagag 414
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766  ccttaagttgctttgtcaggctgttttaatcaaagcaacaggaaaaagaactaagaagag 707

                                                                        
Query: 415  gttacatcatttttataggatgagaaagctaagaaagagtattttattagaatctgtatg 474
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 706  gttacatcatttttataggatgagaaagctaagaaagagtattttattagaatctgtgtg 647

                                                                        
Query: 475  tatatgtgcaagtgcacgcgcacacacacacacatctgtgagggttcatacatgtcacag 534
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646  tatatgtgcaagtgcacgcgcacacacacacacatctgtgagggttcatacatgtcacag 587

                                                                        
Query: 535  caagtacacagtggtcaaacgacaacctgcaggagtcagttctctccctccaccatgaga 594
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586  caagtacacagtggtcaaacgacaacctgcaggagtcagttctctccctccaccatgaga 527

                                                                        
Query: 595  gactgagcaatagatctaaagtcattagatccaaccttcactcactgaaccatcttacca 654
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526  gactgagcaatagatctaaagtcattagatccaaccttcactcactgaaccatcttacca 467

                        
Query: 655  gacctccacccc 666
            ||||||||||||
Sbjct: 466  gacctccacccc 455


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no110_j24.g1 MSMg01no110_j24.g1 CHROMAT_FILE:
MSMg01no110_j24.g1 PHD_FILE: MSMg01no110_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:16 2005
         (286 letters)



>mm_chr12_83852481_83853166
          Length = 686

 Score =  513 bits (265), Expect = e-150
 Identities = 280/285 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctatgaagggcagaagcaaggggacattgctgagtgtcacttgagtgctgggacccgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctatgaagggcagaagcaaggggacattgctgagtgtcacttgagtgctgggacccgc 260

                                                                       
Query: 61  tagtgcacagttaggtgggtagagatggatggttatgtggaaaccttgggcctttcccca 120
           |||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||
Sbjct: 261 tagtgcacagttaggtgggtggagatggatggtcatgtggaagccttgggcctttcccca 320

                                                                       
Query: 121 agtcctgttggttccctggacagtgacagcttggctgtgagagcgaagcctaggtgactc 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtcctgttggctccctggacagtgacagcttggctgtgagagcgaagcctaggtgactc 380

                                                                       
Query: 181 ctggatcaggagctcttgtcctggctgaggtcaccttccctttccaggggctgaggtgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctggatcaggagctcttgtcctggctgaggtcaccttccctttccaggggctgaggtgcc 440

                                                        
Query: 241 cttagcttgaatggacattttggaaggagggtggaggtcagctcc 285
           |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 cttagcttgaatggacatttaggaaggagggtggaggtcagctcc 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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