BAC Information

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BAC

Clone NameMSMg01-111J05
Chromosome12 (Build37)
Map Location 32,210,115 - 32,210,734
singlet/doubletsinglet
Overlap geneSlc26a4
Upstream geneTmem18, LOC100043055, Acp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1
Downstream geneLOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22, Hbp1, Prkar2b, Pik3cg, 2010109K11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111J05.T7 (MSMg01no111_j05.b1)MSMg01-111J05.TJ (MSMg01no111_j05.g1)
ACCAG324210AG324211
length1,1631,232
length of high quality
(start - end)
670 (121 - 790)425 (117 - 541)
definitionCHROMAT_FILE: MSMg01no111_j05.b1 PHD_FILE: MSMg01no111_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:05 2005CHROMAT_FILE: MSMg01no111_j05.g1 PHD_FILE: MSMg01no111_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGGGGCATTGGGCGCTATXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGGTCAGGTATGTGCCCTTTAGGGCCCCCTCCCTGTCCTCTTTGATTC
AGACAGCCCCTACTGGCCCGAAAAAATTCTCTGAGAGGTTCAGAGAAAAT
TCTCTGAGAGATTTATGGCTGTGAACTAGCGGCCAAGCTCACAGCAGCTG
GGGGATGGAATCACTGGCTTAACAAGACCACCGAGTCAGACTGCAAGCAA
CTGTGGGATCGCCATTCTGCAAGCTGCTGGCAAATAAGCCATGATAGAGC
AGGCTCACAGTTTAGACATGAGAACATCATGAAGAGAATGCACTACAAAA
GCTGATATTATAAAATCCTTTTTTTTCCCCTACCAACTTTAAAATTTTTC
CTTTGCAGATGATGTGTTAGAAAAGATGGAGCAGTGTGGGTTCTTCGATG
ACAACATTAGAAAGGACAGATTCTTTCTGACGGTTCATGATGCAATCCTC
CATCTGCAGAACCAGGTTAAATCCAGAGAAGGCCAGGATTCCCTGCTAGA
GACGGTAAACATTTCACCTAACTCTAGTCTGAAACCCAGCTTAACTTCTG
GCTTTCTGCCAGCTGTTGAATGTCAAAGAGACCGTTTCTCCTCAGTGAAA
TGAGGATAGACACCGATGACTGCTCAGAAGCCTCCAGGACTAAGGTAGTT
TCTAGGAAGGTGCTCAGTAGTGCCCAAAGACACGAGAGTTCTATACTGAC
GGATGTGGCGTTTGCTGCGATGCTTTTTTTAGAAGACAACACAGAATCTT
GGTTTATTTTCTGTGATGTGAATGCATAAATGTGGTGTATATTAGACAAA
TGAGGAATCTTAAGGTAATATTTGATTCACAAGATACCTTTTGAAAAAGA
AAAAACAAAGAAGGAGTGGCTGGACAGACTGCTCCATAACAAAAGGCTTG
ACTGCTGTGCCAGGTGAAGGGGCCGATCTCTACCACCATGTACATAAAAT
AAAAATTAGCCAAACGCCCGAAAAAACAGGCCCGGGTTGTACGGGCCCGG
TGCCCCCCTATGGGGGTGGTAGAGCCTAGGGGGAATCCCCCCGGGTTCTT
TGACCCGTCCCGTATAACCCCCGAAGGCTCCCCCCTTTTTGGGGAAAGTC
CCCCTCCCTAAAN
TACGACCGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCCCTTTAAAGTCGCTGTTTGTGTGTATAGAGCTTCAAGG
TTGCCTTCTCGGACCTGGACAGCCAATGCAGGGGCTCATCCCTAGGAGAA
ACTGACTCTCCTCCCAACAGTCAGTAGTTACCTATGATTCTTTGTGGAGA
CAGTAGGACCCCATGAAAATTTTTCTCCTTTGATATTAGCATGACCATTA
TTCCAGTCCTGCTTGTGCAGCCATTTCTAGGAGAGGTAGCCTCACAGCAA
ACTTCCTGGTGTTCTGGTTCTCACAATCTTCCCATCCCCTCTTTGACAAT
GCTCTCTGAGCCATAGATGTAGGACCTGTGGTGTAAGGTTTTCTGTTAGG
GTGGGCTCACTGTGATCTGTTGATCTCTGCATTGTTTGCAGTTGCCATTT
TCTGTGATAGTCACCGTTTGCTGTAAAGAGAGGCTTTTTTGATGAGTGGT
AGCTACACTTATTCAGGGAATCATACACAAAGAAGGTTCTGGGCTGTGGA
GCTGGGACTCAAGCTCTGAAAATTGTATCCAGAACTTTGAGGAGGGGTCA
ACGTAAGTGGCAAGCATGACTTTTAGGGTGAGACAGTAGGATGATATCTT
GTTACTGGATGTGAGAGCCTGCCTCTCAGTGGTGCTCTAAGCCCAGAATA
TAATTTCTGAACAGCCCTGTGGATAGAAAACTTGATGGCTTGTGAGAACC
CATCATTAATCTTGTTATATAAGCAAATCTTTCCCATCTTTATTAAAGAA
CAAAATTTTAAAAATTTGATTTTATTTTTGTAAATTGGAATAGAATTTGA
GAATTTTAGTTATAAGCTTTGAAAGTTGTGTTTTTTTTTTCCATTTGAAA
AGTAAGTATCCAGTCCTGGGTCACTGGGCTGAATGGCCCCAGTTTTCTGG
GCTTATGGCTCCTTTGTTGATAGTATATGATCAATTATTATGGGTCTCTT
GGGGTAGATGACCGTTTATTGAACCAAAGTTACTTTTCTCGGCACCGAAT
CTTGTATGGTCTTTGGAGGTTTGGGCCCTTGCTCTTTTAACTTTAAAAAA
CCTCACCTCCCACAAAGGCCCCTGTGTTTCCCTNATGGCCCCTATATTTG
GGAATTAAATGGATCCCTAACATTTTGACTCCGAATAAGGACCCTCCTCA
AAAGGTTCTTTCTCTCTTGTGCTCCATTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_j05.b1 MSMg01no111_j05.b1 CHROMAT_FILE:
MSMg01no111_j05.b1 PHD_FILE: MSMg01no111_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:05 2005
         (670 letters)



>mm_chr12_32209868_32210938
          Length = 1071

 Score = 1054 bits (545), Expect = 0.0
 Identities = 609/655 (92%), Gaps = 40/655 (6%)
 Strand = Plus / Minus

                                                                       
Query: 21  cagagaaaat----tctctgagagatttatggctgtgaactagcggccaagctcacagca 76
           ||||||||||    ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 867 cagagaaaatactctctctgagagattcatggctgtgaactagcggccaagctcacagca 808

                                                                       
Query: 77  gctgggggatggaatcactggcttaacaagaccaccgagtcagactgcaagcaactgtgg 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 gctgggggatggaatcactggcttaacaagaccaccgagtcagactgcaagcaactgtgg 748

                                                                       
Query: 137 gatcgccattctgcaagctgctggcaaataagccatgatagagcaggctcacagtttaga 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 gatcgccattctgcaagctgctggcaaataagccatgatagagcaggctcacagtttaga 688

                                                                       
Query: 197 catgagaacatcatgaagagaatgcactacaaaagctgatattataaaatcc-ttttttt 255
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 687 catgagaacatcatgaagagaatgcactacaaaagctgatattataaaatcctttttttt 628

                                                                       
Query: 256 tcccctaccaactttaaaatttttcctttgcagatgatgtgttagaaaagatggagcagt 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tcccctaccaactttaaaatttttcctttgcagatgatgtgttagaaaagatggagcagt 568

                                                                       
Query: 316 gtgggttcttcgatgacaacattagaaaggacagattctttctgacggttcatgatgcaa 375
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gtgggttctttgatgacaacattagaaaggacagattctttctgacggttcatgatgcaa 508

                                                                       
Query: 376 tcctccatctgcagaaccaggttaaatccagagaaggccaggattccctgctagagacgg 435
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 507 tcctccatctgcagaaccaggtcaaatccagagaaggccaggattccctgctagagacgg 448

                                                                       
Query: 436 taaacatttcacctaactctagtctgaaacccagcttaacttctggctttctgccagctg 495
           |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 447 taaacatttcacctaactctagtctgaaacccagcttaacctctggctttccgccagctg 388

                                                                       
Query: 496 ttgaatgtcaaagagaccgtttctcctcagtgaaatgaggatagacaccgatgactgctc 555
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttgaatgtcaaagagaccgtttctcctcagtgaaatgaggatagacaccgatgactgctc 328

                                                                       
Query: 556 agaagcctccaggactaaggtagtttctaggaaggtgctcagtagtgcccaaagacacga 615
           |||||||||||||||||||||                                   ||||
Sbjct: 327 agaagcctccaggactaaggt-----------------------------------acga 303

                                                                  
Query: 616 gagttctatactgacggatgtggcgtttgctgcgatgctttttttagaagacaac 670
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 302 gagttctatactgacggatgtggcatttgctgcgatgctttttttagaagacaac 248


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1071
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1061
Effective search space:   700260
Effective search space used:   700260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)