BAC Information

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BAC

Clone NameMSMg01-111M24
Chromosome12 (Build37)
Map Location 15,601,728 - 15,602,391
singlet/doubletsinglet
Overlap genenone
Upstream geneMap1lc3-ps7, LOC668492, LOC100042426
Downstream geneLOC217409, Trib2, LOC100043268, EG432636, LOC100043273, Lpin1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111M24.T7 (MSMg01no111_m24.b1)MSMg01-111M24.TJ (MSMg01no111_m24.g1)
ACCAG324388AG324389
length1,1261,172
length of high quality
(start - end)
264 (130 - 393)608 (82 - 689)
definitionCHROMAT_FILE: MSMg01no111_m24.b1 PHD_FILE: MSMg01no111_m24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:36 2005CHROMAT_FILE: MSMg01no111_m24.g1 PHD_FILE: MSMg01no111_m24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGATTTTNNNNAACCATTGGCGCTAAGACTACTAAGGGAGAGGATCCGCG
GAATTCTTTGTTTAGNTCTGCCTTTAAGTTTCCTGGGGTTATTTGAATTT
CTGGAGTCCCCTTAAAAAAGCTCTTTGNATATATTGGATATTAGTCCCCT
ATCAGTTTTAGGATTGGTAAAAATTCTTTCCCAATCTGTTGGTGACCTTT
TTGTCTTATTGACAGTGTCTTTGGCCTTATAGAAGCTTTGCAATTTTATG
AGGTCCCATTTGTCAATTCTTGACCTTACAGCACAAGCCATTGCTGTTCC
GTTTAGGATTTTTTTCCCCCTGTGCCCTTATCTTTGAGGCTTTTCCCCAC
TTTCTCCTCTATTAATTTCAGTGTCTCTGGTTTTATGTGGAGGTTTTTTT
TCCACTTAGACTTGAGCTTGGTCACACACTCCCTAAATGATAAAACCATT
TTCTGTTGCAAAGCTACCTGACTCCCCACCACATACCTCTTATGATAATG
AAAGCAAATGAGGCTAAAATCAAGGACAGAAGAAATGCATCCATTTCTGG
GGGATGAGTTGTCTAGGAGGAGAGGACTGCACAGCCTACACTTCCTGCTT
GTTTGGGAGACAGACCTTCCATCCTCAGAAGGAGAGTGGGCCCTGCTCAG
CTACCACGGGAGCTGATTCACTGCAAGCCTGACTGTTTGATCAGAAAGAA
TGGCGTGGGTGGTCGTGTCCCAGACAGAAGACACTTGTCCAGATGGAGAC
GCGCCTATACACTTGGATTTGCAGCAGACTTGGATCTGCTCAGCTTGTTT
CCGGATCCTTGGGCTGCTCTCTTGACTGAATAAACTGCTGAAGTGGTGGC
AGCCTGTAACCCTGCCTTGAGGAGTTCTTGGATCTCTGAAGTAAGGCCCT
GGTCGAGAGTGTTCTGAGGCCATAGTCCGTTGTGTTGAGAGAAACAGAAA
ACCTTGCTTTGATGGAAAAAAATTGGAACAGAAAACAATATTGGGTCAAC
GGAATGCTTTTTTATTCCAACACCCCATTTGGGTGAGAAATTTTTGGGGT
GGCTTTCCCTTTTCGGGGCCCCATTTTGTAATCCCCGGCCAGGGTTTTTT
TCGGGTTTAATGGAATTTGTTTTTTC
NNCCGCACGAGGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCCTTTCATCCCACTTTGCATATCTATCCATTCA
CCTACTCGTGATTGGAAAAACATTTGCATGTTTTCAAGCTATCAGCAAAT
ATGAAAGATTATGACTTCTGACCTTTTGTACTCAGTTTTTTAGATTAAAA
AATAGTTTCTAATTTCAGACATGTTATATTTCCCCTTTCTGCTTGTTGCC
TGTGACTTTTCACTGGAGACATTGATGAGTAACAAAAGGAGAACTTGACT
ATGGGAGGACAATATTTTTATTTCTATTAAATTTTGCAACTTGACTGCTT
TTGTGTTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCTAAG
TTCTCAAATCCCAGACTAATGTAAAATTTAATATATTCTCTCTATCCCTT
CAGGTTCACAAAGCCCACATGTGTGAAATTTGCCATGTAGTCCAGGCTAG
CCTGGAACTCCTGATTTTCCTGCCTCAATCTCTTCAGTACTGGGATTAAA
GACTTTTGCTATCAAAATTGGCTCTGTTGCTTACTTCTCTGTTTGCATAA
TTTTTTAAAGATTTGTTTCTATTTTTAATTATATGTATATATGTATATTT
ATCTGTGAATTGGTAAGTGTCCATGTATGACTTTGCCCATGGAGGGAAGA
TGAATGTCTCAGATCTCCTGGAGCTGTTGATGCATGTGTTTGTAAGCTGT
CAGATATGTTTGTCTAGGAACCAAACTCATGGCCCCCTGGGAGGGCCACT
ATGCATTCTTCCTTTAATTTCACATTTTTATTTTACTTTACTTTTCCAAT
GTTATTCCCCTTTCCCGTTTTCCCTCTCTGCAAACCCCCTATCCCCATTC
CCCCTCTTAATCCCGCTTTCCTGGTAAGGAAGCTTCCCCTTCCCTTCCCA
CCCTATTCCTGGTTCTCATCAACCCTTAGTTATTCCTTTCTGCAAATGCT
GGGTTTTCAAGCCCCTTTCCTCGGGAATCTAAGGGGTCATTCTCTCTTCC
CCCCCTTGGATTGTATTGTTATAAATAAATTTCCTTTTCTAACTTTCCTA
TTCAAGAATCTTTTTCTCCCCTTAAACCTCTCTCTCCTTTGTGGGGGTTC
CTCTTTTTTTTTCCCCTCTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_m24.g1 MSMg01no111_m24.g1 CHROMAT_FILE:
MSMg01no111_m24.g1 PHD_FILE: MSMg01no111_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:36 2005
         (608 letters)



>mm_chr12_15601528_15602535
          Length = 1008

 Score =  998 bits (516), Expect = 0.0
 Identities = 601/664 (90%), Gaps = 56/664 (8%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgcatatctatccattcacctactcgtgattggaaaaacatttgcatgttttcaagcta 60
           |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 ttgcatatctattcattcacctactcgtgagtggaaaaacatttgcatgttttcaagcta 260

                                                                       
Query: 61  tcagcaaatatgaaagattatgacttctgaccttttgtactcagttttttagattaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagcaaatatgaaagattatgacttctgaccttttgtactcagttttttagattaaaaa 320

                                                                       
Query: 121 atagtttctaatttcagacatgttatatttcccctttctgcttgttgcctgtgacttttc 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 atagtttctaatttcagacatgttatattttccctttctgcttgttgcctgtgacttttc 380

                                                                       
Query: 181 actggagacattgatgagtaacaaaaggagaacttgactatgggaggacaatatttttat 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 actggagacattgatgagtaacaaaaggagaacttgactatgggaggacaatatttttct 440

                                                                       
Query: 241 ttctattaaattttgcaacttgactgcttttgtgttctccctctccctctccctctccct 300
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 ttctattaaattttgcaacttgactgcttttctgttctccctctccctctccctctccct 500

                                                                       
Query: 301 ctccctctccctctc--t------------------------------------------ 316
           |||||||||||||||  |                                          
Sbjct: 501 ctccctctccctctccctctccctctccctctccctctccctctccctctccctctccct 560

                                                                       
Query: 317 ----------aagttctcaaatcccagactaatgtaaaatttaatatattctctctatcc 366
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctccctctccaagttctcaaatcccagactaatgtaaaatttaatatattctctctatcc 620

                                                                       
Query: 367 cttcaggttcacaaagcccacatgtgtgaaatttgccatgtagtccaggctagcctggaa 426
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttcaggttcacaaagcccacacgtgtgaaatttgccatgtagtccaggctagcctggaa 680

                                                                       
Query: 427 ctcctgattttcctgcctcaatctcttcagtactgggattaaagacttttgctatcaaaa 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctcctgattttcctgcctcaatctcttcagtactgggattaaagacttttgctatcaaaa 740

                                                                       
Query: 487 ttggctctgttgcttacttctctgtttgcata-attttttaaa-gatttgtttctatttt 544
           |||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||
Sbjct: 741 ttggctctgttgcttacttctctgtttgcatacattttttaaaagatttgtttttatttt 800

                                                                       
Query: 545 taattatatgtatatatgtatatttatctgtgaattggtaagtgtccatgtatgactttg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 taattatatgtatatatgtatatttatctgtgaattggtaagtgtccatgtatgactttg 860

               
Query: 605 ccca 608
           ||||
Sbjct: 861 ccca 864


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space:   596804
Effective search space used:   596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)