Query= MSMg01no111_o19.b1 MSMg01no111_o19.b1 CHROMAT_FILE:
MSMg01no111_o19.b1 PHD_FILE: MSMg01no111_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:51 2005
(529 letters)
>mm_chr12_72841739_72842671
Length = 933
Score = 880 bits (455), Expect = 0.0
Identities = 511/533 (95%), Gaps = 10/533 (1%)
Strand = Plus / Plus
Query: 3 tcaatagaaagaggggttttctgggaaagaataaaatattcatgggtcctgcttcactcc 62
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 203 tcaatagaaagaggggttttctgggaaagaataaaatactcatgggtcctgcttcactca 262
Query: 63 gtatc------agggctgagggtctattttagtgactctcagatttcacctcaaaggatt 116
||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gtatcttagccagggctgagggtctattttagtgactctcagatttcacctcaaaggatt 322
Query: 117 gctaagaaatgtatttgtctcctttccatattttctgacagatgtgactgtggctccagg 176
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gctaagaaatgtatttgtctcttttccatattttctgacagatgtgactgtggctccagg 382
Query: 177 aaagccttggggacaatcacaagtggagaagataatagccacaaaggctgccggatgcgg 236
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 383 aaagccttggggacaatcacaagtggagaagataatagccacaaaggctgccggatgcag 442
Query: 237 ttaagatgccttttctgatgcataggatatcttatgagattcttataaaacagtaggttt 296
||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 443 ttaagatgccttttctgatacataggatatcttatgagattcttagaaaactgtaggttt 502
Query: 297 aaggctggaaagggagaaagaccatttttactttcttacctgacacttctttatgtagaa 356
|||||||||||||||||||||||||||| || ||||||||||| ||||||||||| ||||
Sbjct: 503 aaggctggaaagggagaaagaccattttcacattcttacctgaaacttctttatgaagaa 562
Query: 357 ggaatattgtctctgtgtaggtaaccctcacccct-cctcatatatttgctagtcctgct 415
||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||||
Sbjct: 563 ggaatattgtctctgtgtaggtaaccctc-ccccttccccatatatt-gctagtcctgct 620
Query: 416 aaaactcttgactctcggctgccaaaggcttccaccaaactctggggtgaggggaccctc 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaactcttgactctcggctgccaaaggcttccaccaaactctggggtgaggggaccctc 680
Query: 476 ttcttaccttgtgttccctttatgtccctgtctttctatcctgccttggtact 528
||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttcttacct-gtgttccctttatgtccctgtctttctatcctgccttggtact 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 933
Length adjustment: 10
Effective length of query: 519
Effective length of database: 923
Effective search space: 479037
Effective search space used: 479037
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no111_o19.g1 MSMg01no111_o19.g1 CHROMAT_FILE:
MSMg01no111_o19.g1 PHD_FILE: MSMg01no111_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:51 2005
(356 letters)
>mm_chr12_72987644_72988399
Length = 756
Score = 681 bits (352), Expect = 0.0
Identities = 355/356 (99%)
Strand = Plus / Minus
Query: 1 tagggcagaggaagaagtcacctctgggacatcccgatgcaatccatctacagtattaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tagggcagaggaagaagtcacctctgggacatcccgatgcaatccatctacagtattaca 497
Query: 61 gatgactacggctatgctgagcacaaggaagcaattaaagctaaaggttctgcagcaggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gatgactacggctatgctgagcacaaggaagcaattaaagctaaaggttctgcagcaggt 437
Query: 121 gcactttgctgagcaaagggtgagcaatgccgtccatctgtggtctagctcaaagtcagt 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 436 gcactttgctgagcaaagggtgagcaatgctgtccatctgtggtctagctcaaagtcagt 377
Query: 181 catttgtactttacccaaacaaacaagacctctgagtacagcaatatccagaaagtaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 catttgtactttacccaaacaaacaagacctctgagtacagcaatatccagaaagtaaag 317
Query: 241 ccagttttagggaatggagaggaagatgattaaggcctttttgtttttttaattggcaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ccagttttagggaatggagaggaagatgattaaggcctttttgtttttttaattggcaag 257
Query: 301 aagcttcaagtctttaagaacacctttcctagcacttttcctttgacagtgccagt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aagcttcaagtctttaagaacacctttcctagcacttttcctttgacagtgccagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space: 259209
Effective search space used: 259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
