BAC Information

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BAC

Clone NameMSMg01-112A17
Chromosome12 (Build37)
Map Location 112,346,104 - 112,346,331
singlet/doubletsinglet
Overlap geneRcor1
Upstream geneLOC100040746, 3110009F21Rik, Dio3as, Dio3, EG629595, EG668245, LOC100040799, Ppp2r5c, 9430024F10Rik, Dync1h1, 1700001K19Rik, Hsp90aa1, Wdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik
Downstream gene4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112A17.T7 (MSMg01no112_a17.b1)MSMg01-112A17.TJ (MSMg01no112_a17.g1)
ACCAG324560AG324561
length744747
length of high quality
(start - end)
336 (73 - 408)190 (78 - 267)
definitionCHROMAT_FILE: MSMg01no112_a17.b1 PHD_FILE: MSMg01no112_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:05 2005CHROMAT_FILE: MSMg01no112_a17.g1 PHD_FILE: MSMg01no112_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTTTGTATCCCAGACTGGCCTTGAACTCACAGAGATCCACCTGC
CTCTGCCTCACAAGTGCTGGGATTAATGGTCTGCACCATCATCACAGGGC
TAAGAAGAAATCTTACTAGTGAAGTAACATTAAAAGCAAGACTGAGTTCG
AGGCCAGCCTGGTGCGCCACCACCGCCCGGCCCCACCTGGCTTCTTAAAC
AGCCTTTTATACCAACATATACTTTTCTTTTCTTTTCTTTTCTTTTCTTT
TCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTT
TCTTCCTTTTGCCTGTTCTGTTCTCTCAAGACAGGATCTTACTATATAGC
CATGGCAGATCTTACACTCACTATGCAGGTGATTGGCGGCCTCACACTAA
TAGAGCTGGGTCTTCCTCTACTCCTGAGTGCTGGGAGTAAAGGCGTGTGC
ATCGACTTCTGGCTCCCACAATATTTTTTAAAATTCCATTTTGTCAAGTG
CTTTGTGATGGCCTGCTCTGTTCCTTGATGTCACTTGAGGTAAGCTCTCA
CCTTGTAGTCCATGCTAGTTCTGCCCCCGACTCACAAGCGTGGACTATGA
CTTGGAGTTGTAGGCCAGTCTGTTTTACCCACCACATTTTGTCCTTTCCC
ATACCCAGCCTTGATATTTGCACATTTTATAACCCTACCTCTCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAACTTGCCTTTTTAAGTTTTGTT
TTTTTTTTTTTTTTATGTTTATGTGCCTATGTGGGTATCTACCATGTATG
TGCCCAAAGAGGTCTAAAGGAGGCGTTAGATCTCCCAGTGCTCCAGTTAC
TGGTGGTTGTGAGCTGCCCAGTATGGTTATTGAAGTTCCAACTCAGGTTC
TGAGTATGTTTTTATGACAGCTGTCGTTGTCGTCGTTGTTATAGTTTTTC
AATTTTTATTTTCTTTATCTATTTTGTATTATTACTATTGTGAGTGTACA
GTGTATATGTGCGTGCTGTGGTGAGCTCAGTGGACATGTGTAAATCATAG
ACGGCTTTCAGTTGGCGCCCTCCTGCTGTTGTGTGCTCCAGCTGAGCAGC
GTAGGTCATCACGTTTGTGCCTAGCGCAATTCACCTGCCGAGCCTTCTCT
CCAGTCTCGTTGTGACTGACCCAGGCTCTTACCTACTCTGCCTATTCTAG
TCTTTGACCCCTATTTGATAGTTCCCGGTTTTTAGCATTTCGCTCATCTG
TTGTTTTCAACTTATTGGCCTCCAGTTTCCATATGGGACTCTTATATATG
GCACTCTCTTCCTTCTATTTCTGTATGATTGAACGAATACCCCTCCTTTA
CTTCTGACTCTAATAACTTACTCTTTCTTTCCCTTTTCTGCCTGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_a17.b1 MSMg01no112_a17.b1 CHROMAT_FILE:
MSMg01no112_a17.b1 PHD_FILE: MSMg01no112_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:05 2005
         (336 letters)



>mm_chr12_112345854_112346589
          Length = 736

 Score =  427 bits (221), Expect = e-124
 Identities = 227/229 (99%), Gaps = 1/229 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggccttgaactcacagagatccacctgcctctgcctcacaagtgctgggattaatggtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ggccttgaactcacagagatccacctgcctctgcctcacaagtgctgggattaatggtct 419

                                                                       
Query: 61  gcaccatcatcacagggctaagaagaaatcttactagtgaagtaacattaaaagcaagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gcaccatcatcacagggctaagaagaaatcttactagtgaagtaacattaaaagcaagac 359

                                                                       
Query: 121 tgagttcgaggccagcctggtgcgccaccaccgcccggccccacctggcttcttaaacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tgagttcgaggccagcctggtgcgccaccaccgcccggccccacctggcttcttaaacag 299

                                                            
Query: 181 ccttttataccaacatatacttttcttttcttttcttttcttttctttt 229
           ||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 298 ccttttataccaacatatacttttcttttcttttctttt-tttcctttt 251


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)