Query= MSMg01no112_b05.b1 MSMg01no112_b05.b1 CHROMAT_FILE:
MSMg01no112_b05.b1 PHD_FILE: MSMg01no112_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:07 2005
(627 letters)
>mm_chr12_54248074_54249101
Length = 1028
Score = 1029 bits (532), Expect = 0.0
Identities = 597/624 (95%), Gaps = 10/624 (1%)
Strand = Plus / Plus
Query: 5 gaattctaattataccctttcctgggtaaggaccgaaagcattaggggtcatcataatgt 64
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 205 gaattctaattataccctttcctaggtaaggaccgaaagctttaggggtcatcataatgt 264
Query: 65 tgtgagtgttccaccactctataatagaacatcttacacagaccagtggaggaagtgtca 124
||||||||||||||| |||||||||||||| || || ||||||||||||||||||||||
Sbjct: 265 tgtgagtgttccaccgctctataatagaacgtcccacgcagaccagtggaggaagtgtca 324
Query: 125 gcctgggagccaggtatctcctggcttgtgtttgtacatcgttgcattctttggtactga 184
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 325 gcctgggagccaggtatctcctggcttgtgttcgtacatcgttgcattctttggtactga 384
Query: 185 ctacctgacattttcttatgggtttttttaaaagaacttgataaaattgaaaccatcccc 244
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 385 ctacctgatattttcttatgggtttttttaaaagaacttgataaaattgagaccatcccc 444
Query: 245 agaagaatagatgaattgatgacccagagaaaagatcatgtgcttgatttttcttttttt 304
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agaagaatagatgaattgacgacccagagaaaagatcatgtgcttgatttttcttttttt 504
Query: 305 ttttt-gaaaacatatgaacatactaaggcatctatataacttactgaactgaaaatgtg 363
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttttttgaaaacatatgaacatactaaggcatctatataacttactgaactgaaaatgtg 564
Query: 364 tttgtgtattctttgagccttgagctagtgaaagtcacatttcataacttctcatttcag 423
||||||| |||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 565 tttgtgtgttct---------gagctagtgaaagtcacatttcataacttctcatctcag 615
Query: 424 atcgctagcagatgatttcccctccccaggcagcttccagaaagggcttcatcctgcgaa 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 atcgctagcagatgatttcccctccccaggcagcttccagaaagggcttcatcctgcgag 675
Query: 484 taacagccattgctgacacctttccctgtcacctttttctttcctgtagatagcctggct 543
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 676 taacagccattgctgacacctttccctgtcaccgttttctttcctgtagatagcctggct 735
Query: 544 gaagctcggggctggcctgacccaccctgggctggtcttgggttccatcctattatcatc 603
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 736 gaagctcggggctggcctgacccaccctgggctggtcttgggttccatcctgttatcatc 795
Query: 604 actgcctcctgccatgttgacttc 627
|||||||||||||| |||||||||
Sbjct: 796 actgcctcctgccacgttgacttc 819
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1028
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1018
Effective search space: 628106
Effective search space used: 628106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no112_b05.g1 MSMg01no112_b05.g1 CHROMAT_FILE:
MSMg01no112_b05.g1 PHD_FILE: MSMg01no112_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:07 2005
(588 letters)
>mm_chr12_54306225_54307212
Length = 988
Score = 627 bits (324), Expect = 0.0
Identities = 327/328 (99%)
Strand = Plus / Minus
Query: 261 tttattacatattttcctcaattacatttccaatgctatccccaaagtcccccataccct 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 tttattacatattttcctcaattacatttccaatgctatccccaaagtcccccataccct 929
Query: 321 cccctccactcccctacccacccattcccattttttttggccctggcgttcccctgtact 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 cccctccactcccctacccacccattcccattttttttggccctggcgttcccctgtact 869
Query: 381 ggggcatatacagtttgtgtgtccaatgggcctctctttccagtgatggctgactaggcc 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 ggggcatatacagtttgtgtgtccaatgggcctctctttccagtgatggctgactaggcc 809
Query: 441 atcttttgatacatatgcaggggtttagctgaggtgggaacagatcttaccagaccaggg 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 atcttttgatacatatgcaggggtttagctgaggtgggaacagatcttaccagaccaggg 749
Query: 501 gatgcagcactcaagcatctctggagagaccttagcagcctgggacctgaaatccaaggc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 gatgcagcactcaagcatctctggagagaccttagcagcctgggacctgaaatccaaggc 689
Query: 561 tgacatggcgtacagaggggatggaaac 588
|||||||||||| |||||||||||||||
Sbjct: 688 tgacatggcgtatagaggggatggaaac 661
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
