BAC Information

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BAC

Clone NameMSMg01-112K08
Chromosome12 (Build37)
Map Location 65,672,640 - 65,672,857
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435302, EG623046
Downstream geneLOC623123, LOC217645, LOC217647, Gm527, Klhl28, A430041B07Rik, Prpf39, Fkbp3, Fancm, C79407, Wdr20b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112K08.T7 (MSMg01no112_k08.b1)MSMg01-112K08.TJ (MSMg01no112_k08.g1)
ACCAG325001AG325002
length709823
length of high quality
(start - end)
223 (50 - 272)81 (129 - 209)
definitionCHROMAT_FILE: MSMg01no112_k08.b1 PHD_FILE: MSMg01no112_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:51 2005CHROMAT_FILE: MSMg01no112_k08.g1 PHD_FILE: MSMg01no112_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCGCTATAGTTCAGAAAATGCGCGGAATTCAAGTTTCTATACCCATTTT
GAGCCAATACTTTTAAGGAGTTAAAAAAAAAAAGAAAGAAGAATGCAAAT
CTCCCTCAAATACATCCCAACAGCCTCTCGGCAAGCTTCTACTTTAATTG
CAAACACTGCTGTGAGAACTATCAATTTCAGATTTTCCTCTGTCAACCAA
AAACACTTTTAAGCCAAAGTGAAGTTAAGTCAAGGGATGCCACAAAAAGA
AAGGAAAACATGTTTTCTAATACTGATAGTCATGTTGAGGATACACTTGT
AAAACCAATTTCCACCTCCATGAGTCAATATACAATAAAGTCCAACTCTG
ACCGTTTGTACGCGAAATCTTTTCTCACATGTATTCCCATCTGTACATAC
GCTCATAGACTAGTCTTGGAGCTAGGGAGCTAACAATTATTAAAACTTTG
CTCAGAAACACGAACTACATGCAATACGTTTAATCACCCATCCGGCATGA
ACAGAAACATACATTAATCACCAAATAATTATCTAGCCTATACCCCATAG
ACAATGAAGGTATAGCAAAAGCTTGTCCATTTGCCTAAATCCCCCCCCAT
CCCATGAACGGTGCTATTCTCCCCACACAGGACACATTTAATGTTGTATT
CTCCCGCGCGCTTATCATCACCACCCACTAAACAAAACCTTTTTATGTAT
TCTGTGAGC
TGTCCCCCTAATTACTTTTATTTTTTCCTTCCTTTTTCCCCCCTTTTCCC
TCTTCTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATC
ATCATGATATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGG
GTGCCCTGGATTGCGCGAATTGTGCGCCCTGGGTTCTGATGATGGTGAGT
GGTCCTGGCTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGG
CAATCTCTGGAGTTAGTTGTTATAGTTGTCTCTTGTTAAGAGACTGTTCC
TCTGTTGATTTCGTTACCCTCTATTATTAGGTTTTGTGATACAAGCTCTC
TTCTCTGAGTTTCAGTGGTCAGAGCAGCCTCTGTATTGCAGCTCTCCTCT
CCCATGGAAGGTGTACAGTTATCTTGTGTCCGGATCTCTTATTGGTTGCA
AGTGAAGGTTTAAAACCGGACCTTTCCCTGAACCTGTGTTGTTCTGTTCA
CTAACGTGGCCTTTCTGTTTGTTCTCTTACCATGTTTTCGCCTCTTCACC
TTTTGTGTTTCTTGCCCTTCAACCATCTCGCCTCTTCTCGTATCCTCATC
TTGTTTTCTCCCCCCTAATCCCCTGCGCCCTCTTTTGTTTCTCACTCTGC
TTTGCTCTTTCCTGCACCCTCAATTATGTTCCCCCCCCTCCAATACCTTT
TCTGCTTTACTCTTCCTCCCTCTTTTTCCCCCCCGATTCCTTCTTTTCCC
CCTTTCTCTTTTATCCCCCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_k08.b1 MSMg01no112_k08.b1 CHROMAT_FILE:
MSMg01no112_k08.b1 PHD_FILE: MSMg01no112_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:51 2005
         (223 letters)



>mm_chr12_65672440_65673057
          Length = 618

 Score =  373 bits (193), Expect = e-108
 Identities = 214/223 (95%), Gaps = 5/223 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagccaatacttttaaggagttaaaaaaaaaaagaaagaagaatgcaaatctccctcaa 60
           ||||||||||||||||||||||||||||| |||  |||||||   |||||||||||||||
Sbjct: 201 tgagccaatacttttaaggagttaaaaaagaaa--aaagaag---gcaaatctccctcaa 255

                                                                       
Query: 61  atacatcccaacagcctctcggcaagcttctactttaattgcaaacactgctgtgagaac 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 256 atacatcccaacagcctctccgcaagcttctactttaattgcaaacactgctgtgagaac 315

                                                                       
Query: 121 tatcaatttcagattttcctctgtcaaccaaaaacacttttaagccaaagtgaagttaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tatcaatttcagattttcctctgtcaaccaaaaacacttttaagccaaagtgaagttaag 375

                                                      
Query: 181 tcaagggatgccacaaaaagaaaggaaaacatgttttctaata 223
           |||||||||| || |||||||||||||||||||||||||||||
Sbjct: 376 tcaagggatggcagaaaaagaaaggaaaacatgttttctaata 418


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 618
Length adjustment: 9
Effective length of query: 214
Effective length of database: 609
Effective search space:   130326
Effective search space used:   130326
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)