BAC Information

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BAC

Clone NameMSMg01-113G21
Chromosome12 (Build37)
Map Location 108,465,570 - 108,465,794
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040420, 1700121N20Rik, LOC100041191, LOC100040451, LOC673604, LOC100040484, LOC382635
Downstream geneLOC100041251, LOC100040497, LOC668151, Bcl11b, Setd3, Ccnk, EG668158
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113G21.T7 (MSMg01no113_g21.b1)MSMg01-113G21.TJ (MSMg01no113_g21.g1)
ACCAG325570AG325571
length697696
length of high quality
(start - end)
86 (66 - 151)227 (81 - 307)
definitionCHROMAT_FILE: MSMg01no113_g21.b1 PHD_FILE: MSMg01no113_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:51 2005CHROMAT_FILE: MSMg01no113_g21.g1 PHD_FILE: MSMg01no113_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATCATATTTGCGGCGCTATACGATCCTTTTCAAGAGGGCCGCGGAATTC
AGATTCTCCAAAGACAGTGTCAGGCAGGGCCCTGAGGCTGTATCCTAGGA
CATGATGTATGTTCTATCAACAATGAGAACTATGCCCTCTTTCTCAGGTA
AGTGCCTTCAAGGCTTCTGTCTACAAACCAGAAAGGGGCTCCTCCAGGTC
CCACCTATGGCCTCAGCTGACAGGTCCCAGAGCAGCCTGATGGAGCCCAG
GCTAGAATCCCTCAGGAGAGCAGATGGACTTGAGGAAGACAATGCTGTTT
ATCTCTTCTGTCTAGTTTCTTCATCACTCCAGAATTGATTTTGCAGTGAA
GCGTTTTACAAAGAGTCATATTAACAAACCCCAAGTAGCTGAAAAGCTGT
CCCAAGAGCGCGTGCTGAATTGCCCCTCTCTAAATCCCTCACCATATGAG
ACTGAGTACCCGAAAAAACAGGAAGTACAAAGAAGACGCCCTTTGGAAAT
ATATCTTAGAACTATGAGAGCTAGAGAAAAGAGGAAAGCGACGCACCTAG
AGCTAGGACAAAGAACACACGAGGAAAGAAAGGAGCCAGGAGACAAACAA
GACCAATAGGTTAGGAAAGACAGATTTCCTGGGTCCTAAGCGGTAGGGAG
AAAAAACAATTTCTTCAATACAGCAGGGATAAAACCAGATTTTTTAG
ACGATGATAGGAGAGGCCTGGAGGCGCCTGGTCGTGACGTGAGGNGAANN
ANAGAAGTACGAAAACAATCTCANACAGNAGAGGCAGAGCTGGACAGGTA
CTGGGAACTGATTCACCTGGATTTGAGTGCTTGGAATAAACATTTTGAGG
TTTTTTTTTTCTTTTTGAAAATTCTTCATAATTAAATTCTTGCACAATTT
TGCCTTCAGATTGCCACAAGCCAATCCAAAGTCCCAGCAAATGATTTCAC
AGGCATCCTAGTTACACTCTGTTGCTGCGTTAAGTACAACGACCAAAATA
TATTTGCAGATTTAATGGTTTATTTGGCTTACAGGTCACAGTTCATGCTC
AAGGGAATCAACCACCGAAGGCCAAGGCAGGAACCTGAAGGCAGGAACTG
AAATAGATATGGTGTAGGAACACTGCCTTCTGGCTTGCTCTCCATTGCAA
GTCCAGCTGCTTCCTTATATCAACCAAAACCACCTGCCTAGGAGTGGCAC
TGCCCACAGTGGGCTGGGACCATTCACATCAATCATTCCTCATACCCTCT
CCCACCCCTCTTCTGTCATGTGGTACCAGGCTTATCTGACGACTGAAATT
CCTCCAAGAAAATTCCTTCTTTATAGATGACACGACCTGATGTCAAGTTG
ATTCAAAGCAACCAGTCCTAAACATAGCGACTGTATTTGCCACCGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_g21.g1 MSMg01no113_g21.g1 CHROMAT_FILE:
MSMg01no113_g21.g1 PHD_FILE: MSMg01no113_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:51 2005
         (227 letters)



>mm_chr12_108465370_108465995
          Length = 626

 Score =  352 bits (182), Expect = e-101
 Identities = 215/226 (95%), Gaps = 1/226 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaggcagagctggacaggtactgggaactgattcacctggatttgagtgcttggaataaa 60
           |||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||
Sbjct: 425 gaggcagagctggacaggtactgggaactgattcatttggatttgaatgcttggaataaa 366

                                                                       
Query: 61  cattttgaggttttttttttctttttgaaaattcttcataattaaattcttgcacaattt 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||| ||  ||||
Sbjct: 365 cattttgagg-tttttttttctttttgaaaattcttcataattaaattctttcatgattt 307

                                                                       
Query: 121 tgccttcagattgccacaagccaatccaaagtcccagcaaatgatttcacaggcatccta 180
           ||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||
Sbjct: 306 tgccttcagattgccacaagccagtccaaagtcccaccaaatgacttcacaggcatccta 247

                                                         
Query: 181 gttacactctgttgctgcgttaagtacaacgaccaaaatatatttg 226
           ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 246 gttacactctgttgctgtgttaagtacaacgaccaaaatatatttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 626
Length adjustment: 9
Effective length of query: 218
Effective length of database: 617
Effective search space:   134506
Effective search space used:   134506
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)