Query= MSMg01no113_h21.b1 MSMg01no113_h21.b1 CHROMAT_FILE:
MSMg01no113_h21.b1 PHD_FILE: MSMg01no113_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:56 2005
(582 letters)
>mm_chr12_34799214_34800194
Length = 981
Score = 1102 bits (570), Expect = 0.0
Identities = 576/578 (99%), Gaps = 1/578 (0%)
Strand = Plus / Minus
Query: 5 gaattccaacttcagcctgcagtacatttccctcaggtttgacttccatagagacctcca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gaattccaacttcagcctgcagtacatttccctcaggtttgacttccatagagacctcca 722
Query: 65 gtgccgtttacaatgtcgtgttaaaaacaaactttctgggaggttcttgggtatcttttg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gtgccgtttacaatgtcgtgttaaaaacaaactttctgggaggttcttgggtatcttttg 662
Query: 125 agctctcccaagaatatacaaattgtttacaatggacatcacacatatccttaaagagta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 agctctcccaagaatatacaaattgtttacaatggacatcacacatatccttaaagagta 602
Query: 185 agacttagaaaatactgacagcacttcatgataattttgcctgcacatgattcagccatg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 agacttagaaaatactgacagcacttcatgataattttgcctgcacatgattcagccatg 542
Query: 245 atagccaccccacagcctcgtttaaagagagaggtcactaagcagaagagcaagcctgtc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 atagccaccccacagcctcgtttaaagagagaggtcactaagcagaagagcaagcctgtc 482
Query: 305 ccaagccatgcacagtagctcaggagtctccccagaaaggcccaagccatacacaggagc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ccaagccatgcacagtagctcaggagtctccccagaaaggcccaagccatacacaggagc 422
Query: 365 acagcaatcatcacagaaaagctcaaattttattatatgtgagctgcctttttaatctca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 acagcaatcatcacagaaaagctcaaattttattatatgtgagctgcctttttaatctca 362
Query: 425 cacaaaacttaacagtgataacaaatatctaaaaaaaaacgaaattggctgatttactaa 484
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 361 cacaaaacttaacagtgataacaaatatct-aaaaaaaccgaaattggctgatttactaa 303
Query: 485 tatatatgaaatgacactgagctatgagatgtatttgcagtatagtaacattttaacagt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tatatatgaaatgacactgagctatgagatgtatttgcagtatagtaacattttaacagt 243
Query: 545 taaaaaaaatctgatatgattgtcttttatttataaaa 582
||||||||||||||||||||||||||||||||||||||
Sbjct: 242 taaaaaaaatctgatatgattgtcttttatttataaaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 981
Length adjustment: 10
Effective length of query: 572
Effective length of database: 971
Effective search space: 555412
Effective search space used: 555412
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no113_h21.g1 MSMg01no113_h21.g1 CHROMAT_FILE:
MSMg01no113_h21.g1 PHD_FILE: MSMg01no113_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:56 2005
(633 letters)
>mm_chr12_34644297_34645329
Length = 1033
Score = 1185 bits (613), Expect = 0.0
Identities = 628/633 (99%)
Strand = Plus / Plus
Query: 1 cttaaaaaccatacttcctctgaaggaaaagaaaaacataaattacaaaagacaacattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttaaaaaccatacttcctctgaaggaaaagaaaaacataaattacaaaagacaacattc 260
Query: 61 tatttatttattgatgacccatggtaaaatgcaaatagatccggtgtctaaatgcattca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatttatttattgatgacccatggtaaaatgcaaatagatccggtgtctaaatgcattca 320
Query: 121 tatttttatgactgttttgtaaatatcttttgtatattatttttctgcaataaataaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatttttatgactgttttgtaaatatcttttgtatattatttttctgcaataaataaata 380
Query: 181 tgattgaaaaattttaagaactttaaagtttggtctatatttttaagactcagaattaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgattgaaaaattttaagaactttaaagtttggtctatatttttaagactcagaattaac 440
Query: 241 ttggtggtaaatacttgtttgtttaactctaggggcatctaggagggagttgggggacta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttggtggtaaatacttgtttgtttaactctaggggcatctaggagggagttgggggacta 500
Query: 301 atataaacaaagaagtgaaaacctcaaataaaccagctactgacggagacagccagctat 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 atataaacaaagaagtgaaaacttcaaataaaccagctactgacggagacagccagctat 560
Query: 361 ttaaaagacagctctaatattattacagcttggcgttcagcagggctcaccgcctctcca 420
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 ttaaaagacagctctaatattattacagcttggcgttcagcagggctcacagcctctcca 620
Query: 421 tgccttagttcttggggcagcaaaggttgaacagatttgctaacacctacttcttaccga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgccttagttcttggggcagcaaaggttgaacagatttgctaacacctacttcttaccga 680
Query: 481 gctaaagcactgaaataagcgatgtgataccagttttatttccttgtcactatggatttt 540
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actaaagcactgaaataagcaatgtgataccagttttatttccttgtcactatggatttt 740
Query: 541 tgtcttttccttcatttccatttctgagaaatgccaatgtgctaatgaaaacaatacata 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgtcttttccttcatttccatttctgagaaatgccaatgtgctaatgaaaacaatacata 800
Query: 601 cattatatatgtatgtatactttatctatgtag 633
|||||||||||||| ||||||||||||||||||
Sbjct: 801 cattatatatgtatatatactttatctatgtag 833
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
