BAC Information

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BAC

Clone NameMSMg01-113M14
Chromosome12 (Build37)
Map Location 31,414,902 - 31,590,594
singlet/doubletdoublet
Overlap geneLOC100043055, Acp1
Upstream geneMyt1l, Pxdn, Tpo, Sntg2, Tmem18
Downstream geneSh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113M14.T7 (MSMg01no113_m14.b1)MSMg01-113M14.TJ (MSMg01no113_m14.g1)
ACCAG325833AG325834
length712715
length of high quality
(start - end)
505 (73 - 577)461 (67 - 527)
definitionCHROMAT_FILE: MSMg01no113_m14.b1 PHD_FILE: MSMg01no113_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:19 2005CHROMAT_FILE: MSMg01no113_m14.g1 PHD_FILE: MSMg01no113_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,590,090 - 31,590,594)(31,414,902 - 31,415,362)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXCTATTTTCAGAGAGAGCGCGGAAT
TCTATGGTTATTTCAAGGAATCCCAAACCCGACAGTTGTGGGAAGGGAAG
GCAGATTTGTAGCCAACTAGTATGGGACTCCTGACCTATCTGTTGATGTC
AGAAGTTGGGGCAGGTGGGGCCGACAAGAGGAACCTCCCTGTTCCTCCAG
CTGGCTAACTCGTGGGGACCATAGGCTTCTTGGGACAGGGCTTTACGTAT
GATTACTCAATAAAGCTTGTATTGAATTGCCTTGTGTTTTGTTTTGAAGT
ATTACTAGTCTTTATTATGTATGTATACTTAAACATAGCTATTTCTGTTC
TATTATACTTTGTTTTAAATGTAGCTGATTGCAACTTACTTTGTTGATTT
CAAGATTTGGTCTCGCCTCATTGCTAGTGAAAATTGATTTGTGTTTTACA
TGCTTTCTTGCTGTTTAGTTACCTCAGCCATTCTGTCAGGACCATGAATC
TGGTTCTCTCAGGGAATTCTGTACTGTCTTGCCAACCTTAGATGCAGGCA
CTGGGCATCCACTTTGGGAGTAGTCCACTCAATCTTTGGGCCAGAAATCT
GTATCTGCCCATCTGCCACAGCTAATACCCTCTATATGCCTTCTCCCTCT
CTTTTTAAGGTAACATTTGCCGGTCACCCCTTGCAGAAACAGTATCAGGA
AATTGGTAACTG
TGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTTAGGACTGACATAGGACAGGAAGGACATTCA
ATAAATAAGAACATGGGAAAATACACCAAGAAATCTATAAATTGATATAA
TTGGTTTAACATTCTGCCCAATGAGCTCTAATAGCTCACAATGTGTATAG
GCCTGAGTTCATATCCATAGGTGAGTGTTTGTTAATTATTAAACACAGTT
AATATTTCTGCTTAAGTAATTCTTCTAAGACTACTTCAATAAACTGCAAC
TAAACAAATAGCTCAAGTGCTAGAACTGTTGTTATGTTCATTTAGGAAAT
AACGAAATTACAAATTGGATCATTATGAGCAGACAGGGCTAGTCAGGTTA
GCTATCTCACTCGGCACAGATAATGACAGTGAACCAAGTTAGTGTCTCTT
CTCACAGCTGTGAGATACCCCAGATACTGCTACAGGCCTAGACTCTCACT
CAAATTCATGAGGTACATGTATCGGGGGTGTACTGTACACATATTTGGGG
AGGCTCAGAGTTGAATGCTGTAGTGTCATCAGGAACTGACAGGACGGCTC
CCGTGTGCACCCAATGTATATAGAATTTACACACATGCCCACACACAAAC
CCAACCCGGAAAGTAATTCAATTGAAACGCTCTGCGTTCAGGGATTCAGA
TTCCATGGCTAAAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_m14.b1 MSMg01no113_m14.b1 CHROMAT_FILE:
MSMg01no113_m14.b1 PHD_FILE: MSMg01no113_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:19 2005
         (505 letters)



>mm_chr12_31589890_31590794
          Length = 905

 Score =  953 bits (493), Expect = 0.0
 Identities = 502/505 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaaacccgacagttgtgggaagggaaggcagatttgtagccaactagtatgggactcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 ccaaacccgacagttgtgggaagggaaggcagatttgtagccaactagtatgggactcct 646

                                                                       
Query: 61  gacctatctgttgatgtcagaagttggggcaggtggggccgacaagaggaacctccctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 gacctatctgttgatgtcagaagttggggcaggtggggccgacaagaggaacctccctgt 586

                                                                       
Query: 121 tcctccagctggctaactcgtggggaccataggcttcttgggacagggctttacgtatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tcctccagctggctaactcgtggggaccataggcttcttgggacagggctttacgtatga 526

                                                                       
Query: 181 ttactcaataaagcttgtattgaattgccttgtgttttgttttgaagtattactagtctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ttactcaataaagcttgtattgaattgccttgtgttttgttttgaagtattactagtctt 466

                                                                       
Query: 241 tattatgtatgtatacttaaacatagctatttctgttctattatactttgttttaaatgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tattatgtatgtatacttaaacatagctatttctgttctattatactttgttttaaatgt 406

                                                                       
Query: 301 agctgattgcaacttactttgttgatttcaagatttggtctcgcctcattgctagtgaaa 360
           ||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||
Sbjct: 405 agctgattgcaacttactttgttgatttcaagatttggtcttggttcattgctagtgaaa 346

                                                                       
Query: 361 attgatttgtgttttacatgctttcttgctgtttagttacctcagccattctgtcaggac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 attgatttgtgttttacatgctttcttgctgtttagttacctcagccattctgtcaggac 286

                                                                       
Query: 421 catgaatctggttctctcagggaattctgtactgtcttgccaaccttagatgcaggcact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 catgaatctggttctctcagggaattctgtactgtcttgccaaccttagatgcaggcact 226

                                    
Query: 481 gggcatccactttgggagtagtcca 505
           |||||||||||||||||||||||||
Sbjct: 225 gggcatccactttgggagtagtcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no113_m14.g1 MSMg01no113_m14.g1 CHROMAT_FILE:
MSMg01no113_m14.g1 PHD_FILE: MSMg01no113_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:19 2005
         (461 letters)



>mm_chr12_31414702_31415562
          Length = 861

 Score =  876 bits (453), Expect = 0.0
 Identities = 459/461 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttaggactgacataggacaggaaggacattcaataaataagaacatgggaaaatacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttaggactgacataggacaggaaggacattcaataaataagaacatgggaaaatacac 260

                                                                       
Query: 61  caagaaatctataaattgatataattggtttaacattctgcccaatgagctctaatagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagaaatctataaattgatataattggtttaacattctgcccaatgagctctaatagct 320

                                                                       
Query: 121 cacaatgtgtataggcctgagttcatatccataggtgagtgtttgttaattattaaacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacaatgtgtataggcctgagttcatatccataggtgagtgtttgttaattattaaacac 380

                                                                       
Query: 181 agttaatatttctgcttaagtaattcttctaagactacttcaataaactgcaactaaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agttaatatttctgcttaagtaattcttctaagactacttcaataaactgcaactaaaca 440

                                                                       
Query: 241 aatagctcaagtgctagaactgttgttatgttcatttaggaaataacgaaattacaaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatagctcaagtgctagaactgttgttatgttcatttaggaaataacgaaattacaaatt 500

                                                                       
Query: 301 ggatcattatgagcagacagggctagtcaggttagctatctcactcggcacagataatga 360
           |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 501 ggatcattatgagcagacagggctagccaggttagctatctcacttggcacagataatga 560

                                                                       
Query: 361 cagtgaaccaagttagtgtctcttctcacagctgtgagataccccagatactgctacagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagtgaaccaagttagtgtctcttctcacagctgtgagataccccagatactgctacagg 620

                                                    
Query: 421 cctagactctcactcaaattcatgaggtacatgtatcgggg 461
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctagactctcactcaaattcatgaggtacatgtatcgggg 661


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)