Query= MSMg01no115_j23.b1 MSMg01no115_j23.b1 CHROMAT_FILE:
MSMg01no115_j23.b1 PHD_FILE: MSMg01no115_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:36 2005
(518 letters)
>mm_chr12_33888243_33889160
Length = 918
Score = 944 bits (488), Expect = 0.0
Identities = 506/514 (98%), Gaps = 4/514 (0%)
Strand = Plus / Minus
Query: 5 gaattcaatccaatttttcagtaaatcctactatgttctgaaaggacatggcttggaaaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 gaattcaatccaatttttcagtaaatcctactatgttctgaaaggacatggcttggaaaa 848
Query: 65 tctatttttgtgcttttatttacttaaggtctgcatgcctggggatctttctcgtagtgc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 tctatttttgtgcttttatttacttaaggtctgcatgcctggggatctttctcgtagtgc 788
Query: 125 tatgaaactgcctctcgctgaacacacacacacacacacacacacacacacacacacaca 184
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 787 tatgaaactgcctctcgctga----acacacacacacacacacacacacacacacacaca 732
Query: 185 cacacacacacacttaaaagaaaaaggagaaaagacctcaccttcttgtaatagcaccaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 cacacacacacacttaaaagaaaaaggagaaaagacctcaccttcttgtaatagcaccaa 672
Query: 245 taagaatcgaggttcagataccaaagggacctcatgtcttggctctaaattcagtctaca 304
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 671 taagaatcgaggttcagataccaaaggggcctcatgtcttggctctaaattcagtctaca 612
Query: 305 tggggatcctttctggtagcctggctctggtgcacggttcccacttcagggctacgaaga 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 611 tggggatcctttctggtagcctggctctggtgcacggttcccacttcagggctatgaaga 552
Query: 365 gcttactcaccctgcttttcatgacttaagcactattttctttgccctcagaaacacaac 424
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gcttactcactttgcttttcatgacttaagcactattttctttgccctcagaaacacaac 492
Query: 425 tatcaggctagcttgtgtgcctactcatctagtggctttgtagtgtaaactactgggggc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tatcaggctagcttgtgtgcctactcatctagtggctttgtagtgtaaactactgggggc 432
Query: 485 taagggtcttgcttgggagttgcctatactggga 518
||||||||||||||||||||||||||||||||||
Sbjct: 431 taagggtcttgcttgggagttgcctatactggga 398
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space: 461264
Effective search space used: 461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no115_j23.g1 MSMg01no115_j23.g1 CHROMAT_FILE:
MSMg01no115_j23.g1 PHD_FILE: MSMg01no115_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:37 2005
(430 letters)
>mm_chr12_33730303_33731132
Length = 830
Score = 652 bits (337), Expect = 0.0
Identities = 401/435 (92%), Gaps = 23/435 (5%)
Strand = Plus / Plus
Query: 1 accccacctgcttcctacacacacgtacacacgtatgcactcgcgt--gcatacacacac 58
||||||||||||||||||||||||||||||||| |||||||||||| || | |
Sbjct: 205 accccacctgcttcctacacacacgtacacacgcatgcactcgcgtgcgcgt------gc 258
Query: 59 acacacacacacacacacacacacacacacatgcacacagctctgttgggacccacaact 118
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 acacacacacactcacacacacacacacacatgcacacagctctgttgggacccacaact 318
Query: 119 tgaaggtgcccagggcaagaagaacgccagcccaagcatggctcttgctcatcctccagt 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tgaaggtgcccagggcaagaagaacgccagcccaagcatggctcttgctcatcctccagt 378
Query: 179 gtctccagagtcattactggctgaaaaatcaggaaatggagcagatgacgcaatttttac 238
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 379 gtctccagagtcattacaggctgaaaaatcaggaaatggagcagatgatgcaatttttac 438
Query: 239 ttcctcagcagtgcaaggcaccgtaaagtcctcgggacactcagtgtggattagctccat 298
||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttcctcagcagcgcaaggctcggtaaagtcctcgggacactcagtgtggattagctccac 498
Query: 299 cctcagcaggcagctgaggtctccaggcgctgtctgcccctggccccccccgc------- 351
||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 499 cctcagcaggcagctgaggtctccaggcgctgtctgcccctgg--------gttttgtgg 550
Query: 352 cacaccaggctcagaggtttcccactgctttgccaggctcagcgggcggcagaggcggat 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 cacaccaggctcagaggtttcccactgctttgccaggctcagcgggcggcagaggcggat 610
Query: 412 tttgagtctttcatg 426
|||||||||||||||
Sbjct: 611 tttgagtctttcatg 625
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space: 345641
Effective search space used: 345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
