BAC Information

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BAC

Clone NameMSMg01-115O02
Chromosome12 (Build37)
Map Location 82,251,069 - 82,417,977
singlet/doubletdoublet
Overlap geneSmoc1, Slc8a3, LOC100042143
Upstream geneActn1, Wdr22, Exdl2, 2310002D06Rik, Galntl1, LOC100041715, Erh, Slc39a9, 3830431G21Rik, Gm1568, 4933426M11Rik, Sfrs5, Slc10a1
Downstream geneLOC100042148, EG214321, Hspe1-ps2, Adam4, 1810020G14Rik, Synj2bp, Adam21, Med6, Ttc9, LOC100041821, Map3k9, Pcnx, Sipa1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115O02.T7 (MSMg01no115_o02.b1)MSMg01-115O02.TJ (MSMg01no115_o02.g1)
ACCAG327399AG327400
length734713
length of high quality
(start - end)
400 (40 - 439)342 (83 - 424)
definitionCHROMAT_FILE: MSMg01no115_o02.b1 PHD_FILE: MSMg01no115_o02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:57 2005CHROMAT_FILE: MSMg01no115_o02.g1 PHD_FILE: MSMg01no115_o02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,417,582 - 82,417,977)(82,251,069 - 82,251,410)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
CTTCGTAGACCAGGCTGGCCTAGAACTCAGAAATCTGCCTGCTTCTGCCT
CCCAAGTGCTGGGATTAAAGATGTGTGCCACCATGCCCGGCTTCTAGTCT
TTAAAAAAAACTGTATATGTGAACCATTCACGTGTTTTAGTTGTAACAAT
TTCTACTTCTTGGCCCCTTCCATGTTTTCAAGTGGAGTTCGGTGGCTGAA
TGATCACCATACTCGTAGCCTATTCTAAACAGGGTTTAACAGGAGGAGAG
TAAAAAAGACACAGTGGACAGTGTCTGAGGGACACATTGCAACATTCAGT
GTGAAATCAATTCTTTTTCACAGAAAGCCTCAGAACTCCTGGCTGCCTCC
AGAAGTTTCATATTTGAGGAAGGAACTTTCACCCACAAGAGCTCAATCAC
ACCCAGAGCAAGGTGTACTATCCCAAGGACCAGCCCATGTATATCATGCA
CAGCTTCGCACATATGCTTGCAAACCTGAGTTGTGCAAGGTTCCGTGAAT
AAGAACACAGGGCAAGGAAGACTGAAAGCTCTTAGCAACACGGCACATGA
CAAGGAAGATGGCCAATAATCATCTATTTTTAAGTTGATTCCAGGTACGA
GCGCAGCTCCCCCTCCCGACTACGAGGAATCCCTTGGATTTCCCTCTCCT
AGTCTTGGCAGCTCATTTCAAACCCCTTCTTCAN
AAAAAAAAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGCTGCTTTTTCGCACT
GTAAATGCTCCAGGGGGCTGGAGAGAGAGACGCTTCTCATCTCCTCTAGT
TAAGGCAAGGATAGAAAGATAGCTAGGAGTCTGAAAGGGAGTAGCACCCT
GGTCTAAGCTAACCAGGGCCATTAGGAAAATTTTTAAACTGCTTGCCTTG
TACTGGAGGACGAGGAGGGAAGAAAAGACATCAAGCTTTCATGCCATGGG
GCTGCCAGCATCAACCCAACCTTCAGAGCCACTGTGGGAGGGGCCTCCTA
CCCTAGTCTGCTGTTGGGGGGAATGTGCTGGGAGAGTCCTACAGCATCCT
CAGGTTTATGAGAAAGGAGCCTTCATCGCATGAAACCTAGCTCCTTGTGA
GTCCCTGGGATGCGCTCACACCTGGATTTGCTTTGTTGTTGTCTCTGTCC
GGTTCTGCTTCCCTTCTCTTCTTTCTCTTCTTCTTCTTCTTCCTTTTCCT
TTGGCCTTGTACAATTCCCAACCATTCTACAGTTCCGAGAGTATATAGTA
TTTACCTCCATCATGGCAGCCCCCTTTCGTTTCTTTTTAACCCTCAATTC
AGATGATGGTTCTCCATCCTCGCCCCCGATGCACCACCCGCCTTGTGTTC
GCTGGAAATGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_o02.b1 MSMg01no115_o02.b1 CHROMAT_FILE:
MSMg01no115_o02.b1 PHD_FILE: MSMg01no115_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:57 2005
         (400 letters)



>mm_chr12_82417279_82418078
          Length = 800

 Score =  758 bits (392), Expect = 0.0
 Identities = 395/396 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacttcgtagaccaggctggcctagaactcagaaatctgcctgcttctgcctccc 64
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 699 gaattcacttcgtagaccaggctggcctagaactcagaaatctgactgcttctgcctccc 640

                                                                       
Query: 65  aagtgctgggattaaagatgtgtgccaccatgcccggcttctagtctttaaaaaaaactg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 aagtgctgggattaaagatgtgtgccaccatgcccggcttctagtctttaaaaaaaactg 580

                                                                       
Query: 125 tatatgtgaaccattcacgtgttttagttgtaacaatttctacttcttggccccttccat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tatatgtgaaccattcacgtgttttagttgtaacaatttctacttcttggccccttccat 520

                                                                       
Query: 185 gttttcaagtggagttcggtggctgaatgatcaccatactcgtagcctattctaaacagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gttttcaagtggagttcggtggctgaatgatcaccatactcgtagcctattctaaacagg 460

                                                                       
Query: 245 gtttaacaggaggagagtaaaaaagacacagtggacagtgtctgagggacacattgcaac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 gtttaacaggaggagagtaaaaaagacacagtggacagtgtctgagggacacattgcaac 400

                                                                       
Query: 305 attcagtgtgaaatcaattctttttcacagaaagcctcagaactcctggctgcctccaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 attcagtgtgaaatcaattctttttcacagaaagcctcagaactcctggctgcctccaga 340

                                               
Query: 365 agtttcatatttgaggaaggaactttcacccacaag 400
           ||||||||||||||||||||||||||||||||||||
Sbjct: 339 agtttcatatttgaggaaggaactttcacccacaag 304


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no115_o02.g1 MSMg01no115_o02.g1 CHROMAT_FILE:
MSMg01no115_o02.g1 PHD_FILE: MSMg01no115_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:57 2005
         (342 letters)



>mm_chr12_82250869_82251610
          Length = 742

 Score =  630 bits (326), Expect = 0.0
 Identities = 338/342 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgctgctttttcgcactgtaaatgctccagggggctggagagagagacgcttctcatct 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 ctgctgctttttcgcactgtaaatgctccagcgggctggagagagagacgcttctcatct 260

                                                                       
Query: 61  cctctagttaaggcaaggatagaaagatagctaggagtctgaaagggagtagcaccctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctctagttaaggcaaggatagaaagatagctaggagtctgaaagggagtagcaccctgg 320

                                                                       
Query: 121 tctaagctaaccagggccattaggaaaatttttaaactgcttgccttgtactggaggacg 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| 
Sbjct: 321 tctaagctaaccagggccattaggaaaatttctaaactgcttgccttgtactggaggaca 380

                                                                       
Query: 181 aggagggaagaaaagacatcaagctttcatgccatggggctgccagcatcaacccaacct 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggagggaagaaaagacatcaaactttcatgccatggggctgccagcatcaacccaacct 440

                                                                       
Query: 241 tcagagccactgtgggaggggcctcctaccctagtctgctgttggggggaatgtgctggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagagccactgtgggaggggcctcctaccctagtctgctgttggggggaatgtgctggg 500

                                                     
Query: 301 agagtcctacagcatcctcaggtttatgagaaaggagccttc 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agagtcctacagcatcctcaggtttatgagaaaggagccttc 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)