BAC Information

Click to search

BAC

Clone NameMSMg01-119D22
Chromosome12 (Build37)
Map Location 31,819,309 - 31,819,807
singlet/doubletsinglet
Overlap geneLOC100043065
Upstream geneSntg2, Tmem18, LOC100043055, Acp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781
Downstream geneLOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22, Hbp1, Prkar2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119D22.T7 (MSMg01no119_d22.b1)MSMg01-119D22.TJ (MSMg01no119_d22.g1)
ACCAG329912AG329913
length717719
length of high quality
(start - end)
508 (57 - 564)500 (70 - 569)
definitionCHROMAT_FILE: MSMg01no119_d22.b1 PHD_FILE: MSMg01no119_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:20 2005CHROMAT_FILE: MSMg01no119_d22.g1 PHD_FILE: MSMg01no119_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATTTGCGGCGCTAAAGACTCCTATGTCCCAAAACGGCGGAATCTCAAGC
AATTCCCCTCTTCTTAAAAAAAAAAAACACATCAAGTCTAAACTAAAAGG
CCAAATTCTTGGTGCCTCTGTTGTATTTAATAAGCCGAGAATAATAATAG
AGAAGACATTTCCAACAATTATTCCCTTTGATCTTGACTTTTCTGCAAAG
CCCTGCCTTTGGAGACTGTCCTAATTAAATTACTTCAAGCCTTCCCTGCA
AAGTTTCGTGCTGAATGTCTTCAGGACAACAAACTTTGAGAATCCTGCCA
CTTAATTTCACCATTCCCAAACCCTGAGGTAATTTCCTCGTTGCATGTGT
GGTAACGAAGGACAGAAGAGCGGCTCCAGATGCTGAGGGCTCATTTCTTC
TCTGCTGGAAATTCCCCCTGCCTTGGAGAGTGAACCACAGGCTGGTTAGA
GCAGAGACACAAGCCATCTGGGGTCCTCAGTTCAGTCTACACCCCAGGAT
AGGGAGGCTCGAATCTACCTTCAGATCAGAGAGAGGCAGAGACAGAGGCA
GAGGCAGAGGCAGAGGCAGATGCAGAGGCAGAGGCAGAGGCAGATGCAGA
GGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCATAGGCAGAGGCAGAGG
TATAGGCAGAGGCAGAGGCAGAGGCTGATGTCGATAACCACAAATACTGA
GGAGGCAGGACCGAACG
TGCAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCATGAATGCCAGCCTTTGTTGTGGAAACCT
TGCTCCTTAATTTAAACCTTTGGTTAAATAAAGCTGCCTGCCTGTAGCTG
GGCAGAAGAGAGGCAGGCTTTGGTTCCTAGGCTGGGGGTCGAGGCAGAGA
CCACAAGAGAGCAGAGGAAAAAGAAAGGCATCACTTTTGCTAAGGTGGAT
GGTGAGCACAAGGCCATGAGAGCCAGCCTGTTGGAGCAGGAGCGGCCCAG
GTAGAACATGGCAAATGATATCTCGGTGTTATTGACAGGGAAGTAGACAA
AATAGCACAGAAGGCTGATATCTGACCAGCTCTAGTGCTTTAAGGCTTTT
TATAAATATAAAGGTTTTGCATCTTTTATTTGGGAACCGAATGATCTAAG
GTGGGGTAGAAACCCTCAAGTAATATTTACCACAATACCTAGGTCAGTCA
CGTGTAAAGAGGTTGCTTTTCATGCTGACTTATAAAACCTGTTAACTTTC
TGTTTCCAGTGAAAGCAGCTGTCCTCTCAATCCTGGCTGCGCTGTCTTTC
CCATTCACAATTTGCCTTCCTTAAATGAGTCATGGTGCGGCAAGACCGAC
ACAAAGCTGAACCTGGATGTCATAAAGATCCCCAGCTGTTTATCTAGATA
GAGAGTGTTTATACCGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_d22.b1 MSMg01no119_d22.b1 CHROMAT_FILE:
MSMg01no119_d22.b1 PHD_FILE: MSMg01no119_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:20 2005
         (508 letters)



>mm_chr12_31819100_31820007
          Length = 908

 Score =  942 bits (487), Expect = 0.0
 Identities = 496/499 (99%)
 Strand = Plus / Plus

                                                                       
Query: 10  aaaaaaaaaaaacacatcaagtctaaactaaaaggccaaattcttggtgcctctgttgta 69
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 aaaaaaaaaaaacacatcaagtctaaactaaaaggccaaattcttggtgcctctgttgta 269

                                                                       
Query: 70  tttaataagccgagaataataatagagaagacatttccaacaattattccctttgatctt 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tttaataagccgagaataataatagagaagacatttccaacaattattccctttgatctt 329

                                                                       
Query: 130 gacttttctgcaaagccctgcctttggagactgtcctaattaaattacttcaagccttcc 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gacttttctgcaaagccctgcctttggagactgtcctaattaaattacttcaagccttcc 389

                                                                       
Query: 190 ctgcaaagtttcgtgctgaatgtcttcaggacaacaaactttgagaatcctgccacttaa 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ctgcaaagtttcgtgctgaatgtcttcaggacaacaaactttgagaatcctgccacttaa 449

                                                                       
Query: 250 tttcaccattcccaaaccctgaggtaatttcctcgttgcatgtgtggtaacgaaggacag 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tttcaccattcccaaaccctgaggtaatttcctcgttgcatgtgtggtaacgaaggacag 509

                                                                       
Query: 310 aagagcggctccagatgctgagggctcatttcttctctgctggaaattccccctgccttg 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 aagagcggctccagatgctgagggctcatttcttctctgctggaaattccccctgccttg 569

                                                                       
Query: 370 gagagtgaaccacaggctggttagagcagagacacaagccatctggggtcctcagttcag 429
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 570 gagagtgaaccacaggctggttggagcagagacacaagccatctggggtcctcagttcag 629

                                                                       
Query: 430 tctacaccccaggatagggaggctcgaatctaccttcagatcagagagaggcagagacag 489
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tctacaccccaggacagggaggctcgaatctaccttcagatcagagagaggcagagacag 689

                              
Query: 490 aggcagaggcagaggcaga 508
           || ||||||||||||||||
Sbjct: 690 agacagaggcagaggcaga 708


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)