BAC Information

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BAC

Clone NameMSMg01-120H24
Chromosome12 (Build37)
Map Location 83,205,714 - 83,205,954
singlet/doubletsinglet
Overlap genenone
Upstream geneSmoc1, Slc8a3, LOC100042143, LOC100042148, EG214321, Hspe1-ps2, Adam4, 1810020G14Rik, Synj2bp, Adam21, Med6, Ttc9, LOC100041821, Map3k9, Pcnx
Downstream geneSipa1l1, LOC432675, EG666911, Rgs6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120H24.T7 (MSMg01no120_h24.b1)MSMg01-120H24.TJ (MSMg01no120_h24.g1)
ACCAG330853AG330854
length705741
length of high quality
(start - end)
244 (75 - 318)---
definitionCHROMAT_FILE: MSMg01no120_h24.b1 PHD_FILE: MSMg01no120_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:57 2005CHROMAT_FILE: MSMg01no120_h24.g1 PHD_FILE: MSMg01no120_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCCGC
GGAATTCCTCATTTCCCAAACTGGTATCAGGCATACGTGCATGCTCAGGA
GACTGGAAATGGAAAAGAATGCTAGCTTCTCTCCTGTCTCCAGCCCCATT
CTGCAAACAAGATGCCCACACAGAATCATGGAGGTCACTGCCTGGTGCCA
ATTCTTTTCCAGCCACCCATTTTACTTCAGAAATGGAGTTCTTATGACCC
ATGGATCGCCATGGACCGATGACATTGCTGCCCATCACATCTCCCTATCT
TGTGGCTTGGTAGGGGACATCTATCGTTTGGAACATGCACAGACAAAATT
TATCTTCCTTTTTTTAAAAAAGGAGCATACTCTCCCCCTCCCCCGCAGCA
AAGGGAAACTGTATAAAGATGCTGATCTTTGGGGGTGCACGCTTTGACTC
TGATACTAAGGAGCCCGGTATCTTTCTTTGCCTGTGCTGTTGCCAGGCAG
ACTATTTACCAACGCAAAGCTCCTCCCTGATAAGTTGAATTGTTCCCCCT
CCCAACTTCATTATGCCTGCAACCGGAGCTCTGCTGCATACGAAGTCATG
CCCGATACCCTGATTCATGCGCTTAAAATATCTGCCAGCCTGGGCATGCG
CGCGAAGCAACAGATCTGTAAAACACAAATCATATCAACCCCTGTTCTGA
ACATG
TAGTGGTATTGATAAAATGATAAAAATCGAACTGCAAACCACAATTAGAC
TGAATCGATGATATGGTAGGGTGGCGGCGCCTGGTCCAAAATTGAGTGAA
CTATAGAGTTTCCACAAAGTTATATCTGAATGGTTAATAAATGCTTTAAA
AATCAGATGATGACATTGTGGTTGAATACACTAAGAACATAGCATCATTT
TTAAGCATGTGTCAGTGCGACTCCATGTGTAGGTGTGCGCACATAAATGC
GAGAAAAAGTAAAAACCAGAGCTGTTGTTGAACTTCTGAGCTTTGCCTCT
TCCAAGCTGTGTGACCCTGAAGACCTTGGGCGGGAAGTTTCCTCTCCCTG
TGCATCAATTCCCTCATTTATCAGAGGAGGCAACACTAACGCCACCTCCC
CGTTTTATTGCCCGGCTTGTGTGTATTATATGTCCCATTGCTTGACATTC
TTGTGTTTGCTATATAAGTGACCATTGTTAACACTGGTTACCATTTTCTC
ACTACTTTATAATTCACTCCCTCTGTTGCACAAAATCATTAATACGTCTT
TTCACCGCCCCCACAGAATTTTATACTCTGCTGGACTCGCCTTTCACGAC
CCCTGTGTGATTATCACATGATTGATCCTTCAGGTAAAAAATTGGATAAA
ACGGTTGCCAATATAAAGTGGATAAACCTGCCCATAAAAGTGGTGTAAAA
AACCTTGGGATACAATGTACGACCCTGGGGTTAAATTTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_h24.b1 MSMg01no120_h24.b1 CHROMAT_FILE:
MSMg01no120_h24.b1 PHD_FILE: MSMg01no120_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:57 2005
         (244 letters)



>mm_chr12_83205514_83206157
          Length = 644

 Score =  443 bits (229), Expect = e-129
 Identities = 238/241 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatcaggcatacgtgcatgctcaggagactggaaatggaaaagaatgctagcttctctcc 60
           |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 tatcaggcatgcgtgcatgctcaggagactagaaatggaaaagaatgctagcttctctcc 382

                                                                       
Query: 61  tgtctccagccccattctgcaaacaagatgcccacacagaatcatggaggtcactgcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtctccagccccattctgcaaacaagatgcccacacagaatcatggaggtcactgcctg 322

                                                                       
Query: 121 gtgccaattcttttccagccacccattttacttcagaaatggagttcttatgacccatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgccaattcttttccagccacccattttacttcagaaatggagttcttatgacccatgg 262

                                                                       
Query: 181 atcgccatggaccgatgacattgctgcccatcacatctccctatcttgtggcttggtagg 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcgccacggaccgatgacattgctgcccatcacatctccctatcttgtggcttggtagg 202

            
Query: 241 g 241
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)