BAC Information

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BAC

Clone NameMSMg01-120J06
Chromosome12 (Build37)
Map Location 58,370,023 - 58,370,580
singlet/doubletsinglet
Overlap genenone
Upstream geneMbip, EG621837, E030019B13Rik, Titf1, LOC100039993, Nkx2-9, Pax9, Slc25a21, AU021838
Downstream geneLOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761, Sstr1, Clec14a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120J06.T7 (MSMg01no120_j06.b1)MSMg01-120J06.TJ (MSMg01no120_j06.g1)
ACCAG330912AG330913
length729698
length of high quality
(start - end)
188 (49 - 236)559 (74 - 632)
definitionCHROMAT_FILE: MSMg01no120_j06.b1 PHD_FILE: MSMg01no120_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:04 2005CHROMAT_FILE: MSMg01no120_j06.g1 PHD_FILE: MSMg01no120_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGTATTCCCTGGATAATACTTTTAATGTTAACATAATATTCA
ATGGTTATAATGGATAAATGTAAAGTACTTCACTAACTAACTATTTTTTG
TTTTTGTTTTTGTTTTTTTGTTTTTCGAGACGGGGTTTCTCTGTATAGTC
CTGGTTGTCCTGGAACTCACTTTGTAGACCACACTGTCCTAGAACTCAAT
AATCCACCTGCCTCTGCCTCCCATGTGCTGGGATTAAAGGTCTAACTCTT
TTTTTTTTTTTAACATTTTTTTTATTACGAATTTTCCTCAATTACATTTC
CAATGCCATCCCAGAAGTCCCCCATACCCTCCCCCCAAGTCCCCTATCTA
TTCCTTCCCATTTTTTGGCCTTGTCATTCCCTCTGTACTGGGCGCAACCC
AGCTTGAGTGTTTAATGGGTCTCTCTTTCTAGTGATGTCCTAATTCTCTT
CTTTTTTTCCTATTTCATTTATTATTATTTTGATTATATTTTGTTGTTCT
TCTATAACTATATATTCTGTCTCGCCTTGGTTCTCTGTCTTTTCCTTTCT
TTTTTTTTTTTTTGTTTACCTTTTTCCCCTTCCTTTTTATTTAACCTTTT
TCCCGCATTTTCTTCTTTGCGTCTTGATTGTTTTGTTTTTTTTTGTGCCT
TTTCTTTCTCTTNTCTGTTTCTTCTTTCC
CCTGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTTTCCAGAAAAACTCACTGAACAAT
TTGTTCCAGAATCAACAATGAGCATTCTCTTCTGCCATTTTTATTATTTC
ATTTTATATTAGAATATCTAATAAGCGATATATACATGCAATATACTATA
GATATACCTACCCCACAGGATTTCACAACATATGTCATTTACAGAAAAGC
CTACAAATTTCATTTTAACAAGAAGGAACTAAAAAAAAATGTTTTTAGTT
GAATGTATGTATTTTACTCAAACATCTTGAAATTACTCCCTACCTTAGAT
TTAACAATCAAGAAATGTTTAAGTTATTAACAATGTGTAGTGCATATGAC
AAATAAGGTAAATACTCTGTCACCTTTAGCAAGCATTTTTCTCACTGTCT
CACTTATTGTTCTGATGGTTCTGAAGAGATATCATTGCCTTGGCAAGTTT
TGTATAGGAAAGCATTTAATTGGGGGCCTGCTTACAGTTTCAGAGTCTTA
CGCTATTATCGTCATGGTAGGAAGCATGGTGGCAGGCCACTGTGGTCTCA
GAGAAGTAGCTAAGAGCTACATCCTGATCCAAAGTCAAGGGACTGGACCT
GGTGTGGGCTTCTTAATGCCTCAAAGCCTACCCCTAGTGAAGCACTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_j06.g1 MSMg01no120_j06.g1 CHROMAT_FILE:
MSMg01no120_j06.g1 PHD_FILE: MSMg01no120_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:04 2005
         (559 letters)



>mm_chr12_58370009_58370968
          Length = 960

 Score =  980 bits (507), Expect = 0.0
 Identities = 547/561 (97%), Gaps = 5/561 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttccagaaaaactcactgaacaatttgttccagaatcaacaatgagcattctcttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 actttccagaaaaactcactgaacaatttgttccagaatcaacaatgagcattctcttct 513

                                                                       
Query: 61  gccatttttattatttcattttatattagaatatctaataagcgatatatacatgcaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 512 gccatttttattatttcattttatattagaatatctaataagcgatatacacatgcaata 453

                                                                       
Query: 121 tactatagatatacctaccccacaggatttcacaacatatgtcatttacagaaaagccta 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tactatagacatacctaccccacaggatttcacaacatatgtcatttacagaaaagccta 393

                                                                       
Query: 181 caaatttcattttaacaagaaggaact-aaaaaaaaatgtttttagttgaatgtatgtat 239
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 392 caaatttcattttaacaagaaggaactaaaaaaaaaatgtttttagttgaatgtatgtat 333

                                                                       
Query: 240 tttactcaaacatcttgaaattactccctaccttagatttaacaatcaaga-aatgttta 298
           ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 332 tttactcaaacatcttgaaattactccctaccttagatttaacaatcaa-ataatgttta 274

                                                                       
Query: 299 agttattaacaatgtgtagtgcatatgacaaataaggtaaatactctgtcacctttagca 358
           |||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 273 agttattagcaatgtctagtgcatatgacaaatgaggtaaatactctgtcacctttagca 214

                                                                       
Query: 359 agcatttttctcactgtctcacttattgttctgatggttctgaagagatatcattgcctt 418
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 agcatttttctca--gtctcacttattgttctgatggttctgaagagatatcattgcctt 156

                                                                       
Query: 419 ggcaagttttgtataggaaagcatttaattgggggcctgcttacagtttcagagtcttac 478
           ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 155 ggcaagtcttgtataggaaaacatttaattgggggcctgcttacagtttcagagtcttac 96

                                                                       
Query: 479 gctattatcgtcatggtaggaagcatggtggcaggccactgtggtctcagagaagtagct 538
            |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 95  tctattatcgtcatggtaggaagcatggtggcaagccactgtggtctcagagaagtagct 36

                                
Query: 539 aagagctacatcctgatccaa 559
           |||||||||||||||||||||
Sbjct: 35  aagagctacatcctgatccaa 15


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 960
Length adjustment: 10
Effective length of query: 549
Effective length of database: 950
Effective search space:   521550
Effective search space used:   521550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)