BAC Information

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BAC

Clone NameMSMg01-121F02
Chromosome12 (Build37)
Map Location 87,113,712 - 87,113,978
singlet/doubletsinglet
Overlap geneBC011209
Upstream geneNpc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf
Downstream gene0610007P14Rik, Ttll5, Tgfb3, 1700019E19Rik, 1700020O03Rik, LOC100042112, Esrrb, LOC667191, Vash1, Angel1, EG627607
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121F02.T7 (MSMg01no121_f02.b1)MSMg01-121F02.TJ (MSMg01no121_f02.g1)
ACCAG331461AG331462
length913693
length of high quality
(start - end)
---268 (79 - 346)
definitionCHROMAT_FILE: MSMg01no121_f02.b1 PHD_FILE: MSMg01no121_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:03 2005CHROMAT_FILE: MSMg01no121_f02.g1 PHD_FILE: MSMg01no121_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTCACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAGAGAGAGAT
CCGCGGAATTCTCCATGTTACTCAGGAGATAGTGGAAAAGCACTATCTTG
TGTAGTGTGTGTAGTGTGTGCTGTGTGTGCTGTCGTGTGTGTGTGCAGAA
TCAAACCAATAACCACTTTATCCATCTATCTACAAATTTCTCTTTCATCT
TCTATCTATATATATACTTAATATTCCATGTCATCTAACCACCTCCCTTA
TACCTTTTATCCTTCTTTTACCCATTACAACAACAAAATAACTGCTTTTT
TTAATTCTGTGTCCACCTTTCTCTAACTCATTCCTCCCTAATCAATCCCA
TTCCCGCCAACATGCATTATTTCTTATTCCCGTTTTCTTTCTCTACCACC
ACTATATAAGAAAAAATATATATTTTCCCCCCCCCCCCCCCCCCCCCCCC
TCTTTTCCCACTTAACAATACCTTCCTTTACCCGTTTTTTCCCCACACAA
AAAAAAAAAACTACTCTTCCGTCGCCCCTAGCACACATTACATATATATC
TCCTATACATTACACTCTTCCTTTTATACTCCCACTATACGCATATACAC
CAATATCAAACACCTCTTTTCCCCCACACACTTAATATACACCTATCCCC
CCCCCATAATATTGTATTACAATACACTCTCCATACACTGTCTTATCTAT
TATATTCACCTCTCATTAATCCCACGCCACATAATACTATTAACACGCTC
TCCCTCCTACACACACATGTTATAAACACAACATCTACAACACTCAGACT
GTACACATTATATACCTGCTTCTGTTAATGTTCCGTTTCGGCACACCAGT
ATACACACCACATACACATAGTCTTGACCAACCACTTATATTTACCTCCA
TTCTCCCACCGTC
TTTACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATAACATCAACTGCTAGATTTTTA
CAGGCGAGAAAGCCTTTGGAACTTGCTGCTTAGCTTCTAATGGCTCAGAT
TCAGACCCATAGCCATTTATCTCCAAAGCCCTTGATGGGAGAGGCAAATG
CCACAGAACAATGATGCCCCGAGACCTGACATGGCTTTGGCTGACACGCT
CTAGTCTGTAGTTACAGCTATTGAGGGAATGGCAAGAATCATTTCCAGCT
ATAATCAGCTTTGTTTACCACATAGTGTCACCCTGTGGTAGTGTGCGCGT
GTGTCTGTCTGTCTGTCTGCCCCGCCCCGCCCGTCTCTGTGTATCTATCA
CAGTACACATGAGTTCAAAAGACAACTTTTGAGAGTCAATTCTCTCTTTC
CATGATTTGGGTCCAGGGGATCAAACTCAGACAAGTGTCTTTACCCACTC
TCACTGAACCTTCCTACCAGATTTCCTCTAGCTTTGGGCGACATTATTTT
TGCCGTTGAGACAGCGCCTTACCATGTAACTCTGGCCAACCTGCACTTCA
CTACCTGGCCTCACATTCACAAATTTGCCTACACGCGTGTGCCCCCATGC
CCAACCTGCCTGCTCCTTTCCCACCGCCCCCCGCCCTTGCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_f02.g1 MSMg01no121_f02.g1 CHROMAT_FILE:
MSMg01no121_f02.g1 PHD_FILE: MSMg01no121_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:03 2005
         (268 letters)



>mm_chr12_87113512_87114179
          Length = 668

 Score =  485 bits (251), Expect = e-142
 Identities = 263/267 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacatcaactgctagatttttacaggcgagaaagcctttggaacttgctgcttagcttct 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 467 aacatcaactgctagatttttacaggcgagaaagcctttggaacttgctgctcagcttct 408

                                                                       
Query: 61  aatggctcagattcagacccatagccatttatctccaaagcccttgatgggagaggcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 aatggctcagattcagacccatagccatttatctccaaagcccttgatgggagaggcaaa 348

                                                                       
Query: 121 tgccacagaacaatgatgccccgagacctgacatggctttggctgacacgctctagtctg 180
           |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 347 tgccacagaacaatgatgccccgaaacctgacatggctttggctgacaggctctagtctg 288

                                                                       
Query: 181 tagttacagctattgagggaatggcaagaatcatttccagctataatcagctttgtttac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tagttacagctattgagggaatggcaagaatcatttccagctataatcagctttgtttac 228

                                      
Query: 241 cacatagtgtcaccctgtggtagtgtg 267
           ||||||||| |||||||||||||||||
Sbjct: 227 cacatagtggcaccctgtggtagtgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space:   170681
Effective search space used:   170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)