Query= MSMg01no121_f08.b1 MSMg01no121_f08.b1 CHROMAT_FILE:
MSMg01no121_f08.b1 PHD_FILE: MSMg01no121_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:04 2005
(287 letters)
>mm_chr12_31782790_31783475
Length = 686
Score = 501 bits (259), Expect = e-146
Identities = 280/289 (96%), Gaps = 5/289 (1%)
Strand = Plus / Plus
Query: 1 agttagctgttggcaagactgaaccacagaaaggctgactggaggttcccttggacgttc 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 201 agttagctgttggcaagactgggccacagaaaggctgactggaggttcccttgggcgttc 260
Query: 61 cttcagtagtggccgtttggaggtggttctgaagagcaggtttgaaggccagtctaccag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttcagtagtggccgtttggaggtggttctgaagagcaggtttgaaggccagtctaccag 320
Query: 121 atccccagcaatggtaaaaacctaacgaagaaggagaaaatgaagctcttgtctcaaagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atccccagcaatggtaaaaacctaacgaagaaggagaaaatgaagctcttgtctcaaagc 380
Query: 181 ttacgaaccacagctcctagcacctgtaacttctagctgtagtcatgaaggcatagagcc 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 ttacgaaccacagctcctagcacctgtagcttctagctgtagtcatgaaggcatagagcc 440
Query: 241 agggtaa--ttttattgccctcctgtgagttttggcccaagttctgagt 287
||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 441 agggtaaagt---attgccctcctgtgagttttggcccaagttctgagt 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 686
Length adjustment: 9
Effective length of query: 278
Effective length of database: 677
Effective search space: 188206
Effective search space used: 188206
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no121_f08.g1 MSMg01no121_f08.g1 CHROMAT_FILE:
MSMg01no121_f08.g1 PHD_FILE: MSMg01no121_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:04 2005
(284 letters)
>mm_chr12_31903156_31903839
Length = 684
Score = 542 bits (280), Expect = e-158
Identities = 283/284 (99%)
Strand = Plus / Minus
Query: 1 ctaaattactgatcactctttgcaggatttagctttaggttagtttgggtgttactattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ctaaattactgatcactctttgcaggatttagctttaggttagtttgggtgttactattt 267
Query: 61 gtttactaccagacattgttactttatttgttatctaggtctcccattgtttaagaagtc 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gtttagtaccagacattgttactttatttgttatctaggtctcccattgtttaagaagtc 207
Query: 121 gaaatgtttcattgttctacaggtgggcgtccaattttctcagcaccgtttgttgaagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaaatgtttcattgttctacaggtgggcgtccaattttctcagcaccgtttgttgaagat 147
Query: 181 ctcctcttttctctagcttatgtttttggcatctttgtcatgtatcaagtgtctgaaact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 ctcctcttttctctagcttatgtttttggcatctttgtcatgtatcaagtgtctgaaact 87
Query: 241 atgtgtactcccgtttgggttttctgttttgttccgctggtgta 284
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 atgtgtactcccgtttgggttttctgttttgttccgctggtgta 43
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
