BAC Information

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BAC

Clone NameMSMg01-121H18
Chromosome12 (Build37)
Map Location 32,346,150 - 32,486,529
singlet/doubletdoublet
Overlap geneGpr22
Upstream geneLOC100043055, Acp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081
Downstream geneHbp1, Prkar2b, Pik3cg, 2010109K11Rik, LOC100043548
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121H18.T7 (MSMg01no121_h18.b1)MSMg01-121H18.TJ (MSMg01no121_h18.g1)
ACCAG331588AG331589
length710732
length of high quality
(start - end)
285 (71 - 355)291 (68 - 358)
definitionCHROMAT_FILE: MSMg01no121_h18.b1 PHD_FILE: MSMg01no121_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:16 2005CHROMAT_FILE: MSMg01no121_h18.g1 PHD_FILE: MSMg01no121_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,486,245 - 32,486,529)(32,346,150 - 32,346,440)
sequence
TCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGTTTTACACTCAATAAAATTATCTGGGTATCAAATTAACAAC
ATGCTGCAAACAGCTCAAATAATTTTAAGTCACAGAACACTTACTTTGGT
AGTGTACAGACATGCTATGGGCAAACAACTGCAAGGAAATTATGAACACA
ACAGGTTTGCCACACACGGAGTCTGGCGTAGCAGCCTTGCAGCTAGTCTA
GATACATCTGCAAAAGCAGCAACAGAGCTTTGCTTATAGCATCCAAGTTG
TTATTTCTACAGCATTCCTCCTAAACTCAACCAATCAAACCAGAGCTCAC
TGTTAAAAATTTTATTTCACCCCCCCCCCATGAAAATATGCAAAACCACT
ATCTACTGTGCCAAATTATTTATCAAAGCCACAACAGCAAAAAGCAAAAC
AAACAAACTAACTATAACAAAACCCTATGGACTTGACTGGAGTGGGGCTG
GTACTAGACCACAAGCCTGCCACTCACATGGAGGTGCTGCCACTTCAAAG
GCCTCTGGCGGTCTGTAGTACATTGGCCTGTAGCTCTCTTGCTCTTTGGG
TCAGAGCTAACAATTTATGATGATCTATGTTTTGCATCAATTCTATAGCC
TGAAACAGCTTAAGGCCCTACCCAGTAATTGGCTCCTGTCCTGTTATCCA
TGCACAACAC
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTACTGAAAAGTCCAGATCTGTCATGTCGTGA
GACTTAACTCATTTAACTTTTTGTGTTTTAGTTTCTTACTTAGTGAAAAG
ATTAGCTTATTAGAATTGTGGTGACTTTTAGGGTCACTTCAACTTTAAAT
TTCTCATTACTTGTTTAGAACATAAATATTTAGAAGACACTTAATGTTAG
GCTTTGCGTTAGGCTATGGGTAGAGAAATGAGAACACATTCCTTGGTTCT
CCAAGGACTCTGGGATTATTGACAGATACAGACAGGAGTAACTGTCAAAT
GAAATCTGTTTTACATACAACGCCACAAAGTGTTTTGCAGGAGCAGGAGA
AATCAGCTTAAATTCATAGAGTTAAATGCCTAGAGTTTCAGGGGATAAGT
TTTTCCAGAGACTCTCAAGATTTTTGTCTCCCTTTTACACTTGGCATTTT
TCTTTCTTCATGTAATGCCTTTGTACCACGAATTACTGACAATTTAACAT
TAACATTCCTTACAACACCCAATTTTATCTATCAATCTATCCATCACTTC
ATTTACAGATATGTGACGCCCATAGCCCCTGAGTTCTACTATGACAGCTG
AACCCGTACCATTTTTCTCTTCATAAGTCCAATTTGCACCACGCTTCTCC
CCCACAACAAGCGCAGACCGCGTTCCAGATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_h18.b1 MSMg01no121_h18.b1 CHROMAT_FILE:
MSMg01no121_h18.b1 PHD_FILE: MSMg01no121_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:16 2005
         (285 letters)



>mm_chr12_32486045_32486729
          Length = 685

 Score =  551 bits (285), Expect = e-161
 Identities = 285/285 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataaaattatctgggtatcaaattaacaacatgctgcaaacagctcaaataattttaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ataaaattatctgggtatcaaattaacaacatgctgcaaacagctcaaataattttaagt 426

                                                                       
Query: 61  cacagaacacttactttggtagtgtacagacatgctatgggcaaacaactgcaaggaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 cacagaacacttactttggtagtgtacagacatgctatgggcaaacaactgcaaggaaat 366

                                                                       
Query: 121 tatgaacacaacaggtttgccacacacggagtctggcgtagcagccttgcagctagtcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tatgaacacaacaggtttgccacacacggagtctggcgtagcagccttgcagctagtcta 306

                                                                       
Query: 181 gatacatctgcaaaagcagcaacagagctttgcttatagcatccaagttgttatttctac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gatacatctgcaaaagcagcaacagagctttgcttatagcatccaagttgttatttctac 246

                                                        
Query: 241 agcattcctcctaaactcaaccaatcaaaccagagctcactgtta 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 agcattcctcctaaactcaaccaatcaaaccagagctcactgtta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no121_h18.g1 MSMg01no121_h18.g1 CHROMAT_FILE:
MSMg01no121_h18.g1 PHD_FILE: MSMg01no121_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:16 2005
         (291 letters)



>mm_chr12_32345950_32346640
          Length = 691

 Score =  555 bits (287), Expect = e-162
 Identities = 290/291 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttactgaaaagtccagatctgtcatgtcgtgagacttaactcatttaactttttgtgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttactgaaaagtccagatctgtcatgtcgtgagacttaactcatttaactttttgtgtt 260

                                                                       
Query: 61  ttagtttcttacttagtgaaaagattagcttattagaattgtggtgacttttagggtcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagtttcttacttagtgaaaagattagcttattagaattgtggtgacttttagggtcac 320

                                                                       
Query: 121 ttcaactttaaatttctcattacttgtttagaacataaatatttagaagacacttaatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcaactttaaatttctcattacttgtttagaacataaatatttagaagacacttaatgt 380

                                                                       
Query: 181 taggctttgcgttaggctatgggtagagaaatgagaacacattccttggttctccaagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taggctttgcgttaggctatgggtagagaaatgagaacacattccttggttctccaagga 440

                                                              
Query: 241 ctctgggattattgacagatacagacaggagtaactgtcaaatgaaatctg 291
           ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctgggattaatgacagatacagacaggagtaactgtcaaatgaaatctg 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)