Query= MSMg01no122_c20.b1 MSMg01no122_c20.b1 CHROMAT_FILE:
MSMg01no122_c20.b1 PHD_FILE: MSMg01no122_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:21 2005
(809 letters)
>mm_chr12_45725651_45726862
Length = 1212
Score = 1191 bits (616), Expect = 0.0
Identities = 664/682 (97%), Gaps = 7/682 (1%)
Strand = Plus / Minus
Query: 130 tcttcctgttctg-gaagctcctggtttgtcctattgaaggtgccctgggtggttaactt 188
||||||||||||| | || ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1212 tcttcctgttctgtg-agttcctgttttgtcctattgaaggtgccctgggtggttaactt 1154
Query: 189 tttcacatgtgttttctacaaatgacattgcatgctgctaaacttacagattggtatgtt 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1153 tttcacatgtgttttctacaaatgacattgcatgctgctaaacttacagattggtatgtt 1094
Query: 249 cttcgttcctattccattcttggtcttaacgctatcccaagccctatatctaatgctaac 308
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1093 cttcattcctattccattcttggtcttaacgctatcccaagccctatatctaatgctaac 1034
Query: 309 actaaccccaaacctaaactcaacttttgaacagctacaataatgacctcatatacgctt 368
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1033 actaaccccaaacctaaactcaacttttgaactgctacaataatgacctcatatacgctt 974
Query: 369 ctttctcggaaaacaaccaagacctctgtttatagtacttcacaatgatgctgtgcactg 428
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 973 ctttctcagaaaacaaccaagacctctgtttatagtacttcacaatgatgctgtgcactg 914
Query: 429 gtataacaaagttctgactcttgtaaaagtactgccatatttattgtgg----ttttttt 484
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 913 gtataacaaagttctgtctcttgtaaaagtactgccatatttattgtggttttttttttt 854
Query: 485 taatgtatttacctaggacatatgaacagctgttttaattagagcagcttcagagttgta 544
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 taatgtatttacctaggacgtatgaacagctgttttaattagagcagcttcagagttgta 794
Query: 545 tcagtaaaactgtcctctttgctgtaaacaggatttagatttccctatagtagaagtaca 604
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 793 tcagtaaaactgtcctctttgctgtaaacaggatttagattttcctatagtagaagtaca 734
Query: 605 atgattttcgcaaaaacatctgtacagtgtggttttttttccactttgtgggcatgttgt 664
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 733 atgatttttgcaaaaacatctgtacagtgtgg-tttttttccactttgtgggcatgttgt 675
Query: 665 ctcaaaatgatattaaatgttcctgaatttacaggtttttgtgctcaattctcccattct 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ctcaaaatgatattaaatgttcctgaatttacaggtttttgtgctcaattctcccattct 615
Query: 725 tttcttgtcttaaccctagctctgatctttccctgtccttcaatctaaccccaatatctt 784
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 614 tttcttgtcttaaccctagctctgatcttcccctgtccttcaatccaaccccaatatctt 555
Query: 785 ttgcatagctacaataatgaac 806
||||||||||||||||||||||
Sbjct: 554 ttgcatagctacaataatgaac 533
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 809
Length of database: 1212
Length adjustment: 10
Effective length of query: 799
Effective length of database: 1202
Effective search space: 960398
Effective search space used: 960398
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no122_c20.g1 MSMg01no122_c20.g1 CHROMAT_FILE:
MSMg01no122_c20.g1 PHD_FILE: MSMg01no122_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:21 2005
(814 letters)
>mm_chr12_45654849_45656061
Length = 1213
Score = 1473 bits (762), Expect = 0.0
Identities = 804/824 (97%), Gaps = 11/824 (1%)
Strand = Plus / Plus
Query: 1 cacagctgttttagatctagggtgccccacctcaggcttgctcagttcagaacagcctct 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 cacagctgttttagatctagggtgccccacctcaggcttgcacagttcagaacagcctct 260
Query: 61 ctggtgggcattcagtacagggaactctgaacagcaggagagcgcagcaagtgaccttgc 120
||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 261 ctggtgggcattcagtaaagggaactctgaacatcaggagagcacagcaagtgaccttgc 320
Query: 121 ccatcaggctgctctggggagcttctggcagctgctttcttctctgtcacagagatggga 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 321 ccatcaggctgctctggggagcttctggcagttgctttcttctctgtcacagagacggga 380
Query: 181 tgcatttttgagcatggccaagccggaagtgcgaggattcttagatggacatttcataat 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 tgcatttttgagcatggccaagccggaagtgtgaggattcttagatggacatttcataat 440
Query: 241 tgagggtgatgagctggtagggaccctgctgtaccccacccatgacccctggctgctgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagggtgatgagctggtagggaccctgctgtaccccacccatgacccctggctgctgat 500
Query: 301 ctctgtcagcagactgtgttaggatagaatagacaggagatgggaaattcagctctttcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctctgtcagcagactgtgttaggatagaatagacaggagatgggaaattcagctctttcc 560
Query: 361 caaagcttggttttatgtcatctctaattgctgttaattctccaggaaatatttataaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaagcttggttttatgtcatctctaattgctgttaattctccaggaaatatttataaac 620
Query: 421 ttggactaaaatagaaacctggaaacattaatttcatttaaacaaaatgctaagtactcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttggactaaaatagaaacctggaaacattaatttcatttaaacaaaatgctaagtactcc 680
Query: 481 tgtctataattttcatatctaaaaatgtacataatattatctggttaaacaatttaataa 540
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 681 tgtctataattttcatatctaaaaatgtatataatattatctggttaaacaatttaataa 740
Query: 541 agatctctttaagcaaaattatataattgatatgaatacattttagagattgactgtact 600
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 741 agatctctttaagcaaaattatataattgatatgaatacattttacagattgactgtact 800
Query: 601 aagtacttataagatagcatttttacttattatcactgtttttaatattcaaaatattgg 660
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 801 aagtacttataagatagcatttttacttattatcactgttttta-tattcaaaatattgg 859
Query: 661 agacgtttacagttgtagccatccctgtaaggatgtgtgtgtgtgtgtgtgtgtgtgtgt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 agacgtttacagttgtagccatccctgtaaggatgtgtgtgtgtgtgtgtgtgtgtgtgt 919
Query: 721 gtgt----------atcctcacccttgggacataaaattatagatggggatgctacactc 770
|||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 gtgtgtgtgtgtgtatcctcacccttgggacataaaattatagatggggatgctacactc 979
Query: 771 tgacacttctttctttagtgttcatttacagcacatgaagttgg 814
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 980 tgacacttctttctttagtgttcatttacagcacatgaagttgg 1023
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 814
Length of database: 1213
Length adjustment: 10
Effective length of query: 804
Effective length of database: 1203
Effective search space: 967212
Effective search space used: 967212
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
