Query= MSMg01no123_c16.b1 MSMg01no123_c16.b1 CHROMAT_FILE:
MSMg01no123_c16.b1 PHD_FILE: MSMg01no123_c16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:31 2005
(279 letters)
>mm_chr12_100633322_100634000
Length = 679
Score = 499 bits (258), Expect = e-146
Identities = 273/278 (98%)
Strand = Plus / Minus
Query: 1 accaaattcccaaacaacaaccaaaacaacacccacaacagaaatgagttctgggtctga 60
|||||||| ||||||| |||||| ||||||| | ||||||||||||||||||||||||||
Sbjct: 478 accaaatttccaaacagcaaccacaacaacaacaacaacagaaatgagttctgggtctga 419
Query: 61 gataggattctgctgtcaaatagctatttaaaacaatagtttaaattatttggcctgctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gataggattctgctgtcaaatagctatttaaaacaatagtttaaattatttggcctgctt 359
Query: 121 gagatttcttggcacccaagatattagggtatatttggaaaacacagcaggaacttgagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gagatttcttggcacccaagatattagggtatatttggaaaacacagcaggaacttgagc 299
Query: 181 atgaggccattcctacaggaatttggcccctggatgctaatgtcaaggctgcctgtccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 atgaggccattcctacaggaatttggcccctggatgctaatgtcaaggctgcctgtccca 239
Query: 241 gagccagggatctgttgaatcactgttggaggagggca 278
||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gagccagggatctgttgaatcactgttggaggagggca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space: 180900
Effective search space used: 180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no123_c16.g1 MSMg01no123_c16.g1 CHROMAT_FILE:
MSMg01no123_c16.g1 PHD_FILE: MSMg01no123_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:31 2005
(457 letters)
>mm_chr12_100490654_100491511
Length = 858
Score = 801 bits (414), Expect = 0.0
Identities = 447/458 (97%), Gaps = 1/458 (0%)
Strand = Plus / Plus
Query: 1 taccgtcaaaaccccagcaaggtatttctctagacacggacgagacgaccttgaaatgta 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taccgtcaaaaccccagcgaggtatttctctagacacggacgagacgaccttgaaatgta 260
Query: 61 cacacgtacgtggggaggcagaggaactagaagttaattaagacaaaggaaccctgaaag 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacacgtacatggggaggcagaggaactagaagttaattaagacaaaggaaccctgaaag 320
Query: 121 ttctgaatcagtttatccaatttcaagattcacacagtttcagtaatcaaggcgtgtaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctgaatcagtttatccaatttcaagattcacacagtttcagtaatcaaggcgtgtaaa 380
Query: 181 agcctttttttttttttttt-ggatagaagtataacagaattcaatgggaggatatgcat 239
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcctttttttttttttttttggatagaagtataacagaattcaatgggaggatatgcat 440
Query: 240 acatatgcatattttaaacagatgcagcaggaacaacccattttcacatcagctgagccc 299
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 acatatgcatattttaaacagatgcagcaggaacaacccagcatcacatcagctgagccc 500
Query: 300 aacccgagagtcatccctgtggatcatggacagtctttggatcctggactctcccctcga 359
|||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 501 aaccggagagtcatccctgtggatcatggacagccttcggatcctggactctcccctcga 560
Query: 360 ggccttacgccctgaaaagcatgtcttttgatcccagccccgtttcttgcctagattagt 419
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 561 ggccttacgccctgaagagcatgtcttttgatcccagccctgtttcttgcctagattagt 620
Query: 420 ttgatgtgcctctaatttaatttgcacacatatcccag 457
||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgatgtgcctctaatttaatttgcacacatatcccag 658
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 858
Length adjustment: 10
Effective length of query: 447
Effective length of database: 848
Effective search space: 379056
Effective search space used: 379056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
