BAC Information

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BAC

Clone NameMSMg01-126O05
Chromosome12 (Build37)
Map Location 52,097,600 - 52,097,947
singlet/doubletsinglet
Overlap genenone
Upstream genePrkcm
Downstream geneLOC100039517, LOC636070, LOC100039525, 6030408C04Rik, Scfd1, LOC620390, LOC100039578, Coch, Strn3, Ap4s1, Hectd1, EG544864, LOC100039476, Heatr5a, LOC676784
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126O05.T7 (MSMg01no126_o05.b1)MSMg01-126O05.TJ (MSMg01no126_o05.g1)
ACCAG335579AG335580
length702702
length of high quality
(start - end)
349 (74 - 422)417 (75 - 491)
definitionCHROMAT_FILE: MSMg01no126_o05.b1 PHD_FILE: MSMg01no126_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:26 2005CHROMAT_FILE: MSMg01no126_o05.g1 PHD_FILE: MSMg01no126_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAATGCGC
GGAATTCAGTAACCCTTCCGAATGTCTTTGGAGTAAGATCTTCTGTTGTT
TTGGAAAACACTAGTCATTCATCGCACCATTCTTTACAGAATAGGGCCTG
GGATTAATTTATCTGCATACAGTATTTAGAAAAATATTTAAGCTACTGAG
ACACTATTTCCTACTTTCAAAATATAAATAGCATGTAAAACAGCCACTGT
GGATTAGTGTAAAGTTGTATATTGTGGTTGTCTTCATGAACATTTGTTGA
AAGTCTCAGTACTAGAACACAATGTTTTCAGGTCAATAACCAACAAAGAA
GAAGAGCATTTTAGCGGGCAGTGTCCTTCTCTACATGACAGCTTGGCCAT
ACCTGTATTTCAGGAGTAGGTCTTGTGAGAAGAAGCACTGATAAATGAGG
GGAAAATTAGGTGACTATTTTTTTGCTTAAATAATCTCACTGATATTTTT
GATCTTAGCCACCCTTGTAGAATCCTCCAAAACAAATAAAGGCGTAAATG
TTGTCTAAGAGCTGATTTTCACTGGGAAAAATCCCCACCAAAAATCTTAA
AAACATATAATAAAAAAAACCCTGAGCTTGGCCAGAAAGGCGCTCTACAA
AATCAATCCAAAGACCACACTTGGTCCCTTTCCGCCCAAGCCCCCAAGAA
AG
NCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAA
GGACACATGCTCCACTATGCCCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCTATATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAACGAATGACTT
TACGAAATTCCTACCCATATGGATGGACCCTGGAGGGCATCATCCCGAGT
GATGTAACACATTCTCTAAGAACCTTACCCCATATGTATTCACTGATATA
CGTACATTATCTCCCAAACCTAGGATACCCAAGATATTATATCCAATTTG
CC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_o05.b1 MSMg01no126_o05.b1 CHROMAT_FILE:
MSMg01no126_o05.b1 PHD_FILE: MSMg01no126_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:26 2005
         (349 letters)



>mm_chr12_52097400_52098148
          Length = 749

 Score =  658 bits (340), Expect = 0.0
 Identities = 346/348 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtctttggagtaagatcttctgttgttttggaaaacactagtcattcatcgcaccattct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtctttggagtaagatcttctgttgttttggaaaacactagtcattcatcgcaccattct 260

                                                                       
Query: 61  ttacagaatagggcctgggattaatttatctgcatacagtatttagaaaaatatttaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttacagaatagggcctgggattaatttatctgcatacagtatttagaaaaatatttaagc 320

                                                                       
Query: 121 tactgagacactatttcctactttcaaaatataaatagcatgtaaaacagccactgtgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tactgagacactatttcctactttcaaaatataaatagcatgtaaaacagccactgtgga 380

                                                                       
Query: 181 ttagtgtaaagttgtatattgtggttgtcttcatgaacatttgttgaaagtctcagtact 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttagggtaaagttgtatattgtggttgtcttcatgaacatttgttgaaagtctcagtact 440

                                                                       
Query: 241 agaacacaatgttttcaggtcaataaccaacaaagaagaagagcattttagcgggcagtg 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaacacaatgttttcaggccaataaccaacaaagaagaagagcattttagcgggcagtg 500

                                                           
Query: 301 tccttctctacatgacagcttggccatacctgtatttcaggagtaggt 348
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccttctctacatgacagcttggccatacctgtatttcaggagtaggt 548


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)