Query= MSMg01no128_m04.b1 MSMg01no128_m04.b1 CHROMAT_FILE:
MSMg01no128_m04.b1 PHD_FILE: MSMg01no128_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:57 2005
(610 letters)
>mm_chr12_5894333_5895342
Length = 1010
Score = 975 bits (504), Expect = 0.0
Identities = 546/560 (97%), Gaps = 4/560 (0%)
Strand = Plus / Minus
Query: 53 ctgttttgccattgaggatg-ctggaaaggcaggtcattgtcatggaacatcatagaagt 111
||||||||||| |||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct: 1008 ctgttttgccactgaggatgcct-gaaagacaggtcattgtcatggaacatcatagaagt 950
Query: 112 gagagcaaagagccagagggccaggatacctgctgtgagatagtaacttctaggcacaca 171
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 949 gagagcaaagagccagagggccaggatacctgctgtgagatagtaacttctagacacgca 890
Query: 172 ttcattaaatgcactcatgaaaatgtaacaataaaacccattattttatatatgtaatat 231
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 889 ttcattaaatgcactcatgaaaatgtaacaataaaacccattattttatatatttaatat 830
Query: 232 atgttaataatataaaatagaaagtctcagtctactatggctcaagagggaccaactagt 291
|||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 829 atgttaataatataaagtagaaagtctcagtctactatgactcaagagggtccaactagt 770
Query: 292 ctcttaagtttttctgagattcagatcaaaaggaattaggcctctattgtcatatacatt 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 ctcttaagtttttctgagattcagatcaaaaggaattaggcctctattgtcatatacatt 710
Query: 352 tctccctatgttacattttatttgacatcttttctagatagaggactaacagaagggagg 411
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 tcttcctatgttacattttatttgacatcttttctagatagaggactaacagaagggagg 650
Query: 412 atgtaatgttcttgaaagccaacacagaagtgcaatacacattcaaaaacctaagttatg 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 atgtaatgttcttgaaagccaacacagaagtgcaatacacattcaaaaacctaagttatg 590
Query: 472 ggatagtgataaaccccatgaattgaccctcatatcaatgtcag-atttatgctttcctg 530
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 589 ggatagtgataaaccccatgaattgaccctcatatcaatgtc-gtatttatgctttcctg 531
Query: 531 tattacacattcctttgaaatccatttacacttatcactcacagcttttggcctttcaga 590
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tgttacacattcctttgaaatccatttacacttatcactcacagcttttggcctttcaga 471
Query: 591 aaaaaaaatctctcggtcct 610
||||||||||||||||||||
Sbjct: 470 aaaaaaaatctctcggtcct 451
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space: 600000
Effective search space used: 600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no128_m04.g1 MSMg01no128_m04.g1 CHROMAT_FILE:
MSMg01no128_m04.g1 PHD_FILE: MSMg01no128_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:58 2005
(185 letters)
>mm_chr12_5783968_5784553
Length = 586
Score = 321 bits (166), Expect = 2e-92
Identities = 181/186 (97%), Gaps = 1/186 (0%)
Strand = Plus / Plus
Query: 1 gtggcaggaaagaaaaggtgagatctgaggtgtctttcactaacagcaagggctgtggag 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtggcaggaaagaagaggtgagatctgaggtgtctttcactaacagcaagggctgtggag 260
Query: 61 aaacagaaagtgga-ttttttttttctggcagacaaggagcgctctcatggttttatagc 119
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 aaacagaaagtggatttttttttttctggtggacaaggagcgctctcatggttttatagc 320
Query: 120 cagaagatgacattgtcaagaggccacttctcagatgtcattctggtgaccataggtggg 179
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 cagaagatgacattgtcaagaggccacttcacagatgtcattctggtgaccataggtggg 380
Query: 180 tgggtt 185
||||||
Sbjct: 381 tgggtt 386
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 185
Length of database: 586
Length adjustment: 8
Effective length of query: 177
Effective length of database: 578
Effective search space: 102306
Effective search space used: 102306
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
