BAC Information

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BAC

Clone NameMSMg01-129B09
Chromosome12 (Build37)
Map Location 25,574,010 - 25,698,859
singlet/doubletdoublet
Overlap geneMboat2, EG629397, C330002I19Rik
Upstream geneLOC668703, LOC546534, 9030624G23Rik, EG668710, LOC100042945, EG668711, EG668714, LOC629364, Taf1b, Grhl1, EG629383, Klf11, Cys1, Rrm2, LOC668719
Downstream geneId2, LOC100042973, LOC100042974, LOC668726
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129B09.T7 (MSMg01no129_b09.b1)MSMg01-129B09.TJ (MSMg01no129_b09.g1)
ACCAG337185AG337186
length722719
length of high quality
(start - end)
231 (117 - 347)360 (66 - 425)
definitionCHROMAT_FILE: MSMg01no129_b09.b1 PHD_FILE: MSMg01no129_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:23 2005CHROMAT_FILE: MSMg01no129_b09.g1 PHD_FILE: MSMg01no129_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,698,629 - 25,698,859)(25,574,010 - 25,574,368)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTCAGT
CATATCCTAAGCTCCTTTTTGGGGAATGGGGCAGGCTTGGGAGGTTCGAG
ACAGGGTTTCTCCCCTTAGCTCTGGCTGACCTAGAGTTCACTCTGTAGAC
CAAGCTTGCCTTGAACCTGATCAAAGATATGCCTGTCTCTGCCTCCAGAG
TGTTGAGATTAAAGATGTGGGCCACCACTGCCTAGCTAATAGTCTCCATT
GTATTACAAATATTTTTATTCAAATTATCATAGAAAAACTGAAATAATAT
GGCAGTATATAAAAATCTGAATTTCAGCACAAATATTAATGTGCTCATTT
TTTTATTTTACCCCCCCCCCACCCTAAATATAAAGTAAAAGAACTTTAAA
ATGATCCACTTTTAAAATAAATTCCCAAGTGATATCAGATTGTCAAGTAC
TATTACAAAAAAGTTACTACTATCATCTACCACTACCAACACAGCTCACA
CTCAAAGTGCTCTGCTTACGCTAAAACTTATGGTGAGTCTGGGGGTGCAA
CTCATTAGTTAAACATTTCCAGAGCTTGCACCAGCCCTGATTTCAATGCC
CACTATCTCAAAACCACCCACACCTAAATAAAACTTATTATCTGTCCCCG
AATTTGTTTATACTAAATTCTCCTGTCCCCCTAATATTTTTCGATATTTT
TTCCCCCGGTTTTGTGCCCCGC
TGATGTGGGTAGGCTGGCGGCGCCTGTTCACAAATTGAGGTGAACTATAG
AAGTTTCTGAGGAATTCCAGCTCTGCCAAATTTTCACCAACTTTGGGATT
AGACCTTTCAGGGCCTTGGATGAATTCAGCGTCTCAGCTGAGGGGGTACT
GTGTCATAGATGTGCCATACACATACTGGGTATCTGGGTATGCTTTAATT
AGAAAAAAAAAAAGGATATGAACACCAGGAAGCAGCATTTAAACTTGTAG
ATGAAATGCTTTCAGAGGCCACCTTCAGTTACAGAGTTTGGCTGGGTCTT
TTTCTGGGGTCCACTGGTGTCATGACTGAGAGTCCTGTTCCCTCAACGTC
TGTATTCTTCTGTACTAGTCACCACCATGAGCTACAGTTCACTTTGGGGT
TCCCCAGAGTTGAACTCTTTTGTATAAGACTTTGCATTTCTCTTGTGCTT
GAGCACATAGATAAAGCCCATTAAGGAAATGGTCTGTTACATTCCTGTTC
TGCTGATCGGACTTTTATAAGCTCTTGATTTTGAATGTACTTCGCCCGGG
TTGGGTACTGGTTCCTAGTGTCTACCTATGGAACTCCTTTGCAGTGTTTG
GCAGAGAGCATCCTCTCCTGTTCCAGGCCCCAATGTGTTTGCTTGGCGGG
GTCAGCGTGCTTGCCGAGCTATGGATGGGCTCTCATCCAAACTGCTTGCT
CTCCTCGGGATTTCCCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_b09.b1 MSMg01no129_b09.b1 CHROMAT_FILE:
MSMg01no129_b09.b1 PHD_FILE: MSMg01no129_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:23 2005
         (231 letters)



>mm_chr12_25698308_25698938
          Length = 631

 Score =  447 bits (231), Expect = e-130
 Identities = 231/231 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagctctggctgacctagagttcactctgtagaccaagcttgccttgaacctgatcaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tagctctggctgacctagagttcactctgtagaccaagcttgccttgaacctgatcaaag 493

                                                                       
Query: 61  atatgcctgtctctgcctccagagtgttgagattaaagatgtgggccaccactgcctagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 atatgcctgtctctgcctccagagtgttgagattaaagatgtgggccaccactgcctagc 433

                                                                       
Query: 121 taatagtctccattgtattacaaatatttttattcaaattatcatagaaaaactgaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 taatagtctccattgtattacaaatatttttattcaaattatcatagaaaaactgaaata 373

                                                              
Query: 181 atatggcagtatataaaaatctgaatttcagcacaaatattaatgtgctca 231
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 atatggcagtatataaaaatctgaatttcagcacaaatattaatgtgctca 322


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no129_b09.g1 MSMg01no129_b09.g1 CHROMAT_FILE:
MSMg01no129_b09.g1 PHD_FILE: MSMg01no129_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:23 2005
         (360 letters)



>mm_chr12_25573810_25574569
          Length = 760

 Score =  687 bits (355), Expect = 0.0
 Identities = 358/359 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccagctctgccaaattttcaccaactttgggattagacctttcagggccttggatgaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccagctctgccaaattttcaccaactttgggattagacctttcagggccttggatgaat 260

                                                                       
Query: 61  tcagcgtctcagctgagggggtactgtgtcatagatgtgccatacacatactgggtatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagcgtctcagctgagggggtactgtgtcatagatgtgccatacacatactgggtatct 320

                                                                       
Query: 121 gggtatgctttaattagaaaaaaaaaaaggatatgaacaccaggaagcagcatttaaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggtatgctttaattagaaaaaaaaaaaggatatgaacaccaggaagcagcatttaaact 380

                                                                       
Query: 181 tgtagatgaaatgctttcagaggccaccttcagttacagagtttggctgggtctttttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtagatgaaatgctttcagaggccaccttcagttacagagtttggctgggtctttttct 440

                                                                       
Query: 241 ggggtccactggtgtcatgactgagagtcctgttccctcaacgtctgtattcttctgtac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 441 ggggtccactggtgtcatgactgagagtcctgttccctcaacgtctgtattcttctgtaa 500

                                                                      
Query: 301 tagtcaccaccatgagctacagttcactttggggttccccagagttgaactcttttgta 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagtcaccaccatgagctacagttcactttggggttccccagagttgaactcttttgta 559


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space:   263601
Effective search space used:   263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)