BAC Information

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BAC

Clone NameMSMg01-129E04
Chromosome12 (Build37)
Map Location 8,764,049 - 8,764,263
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668388, Apob, 1110057K04Rik, Gdf7, Hs1bp3, BC106175, Rhob, Slc7a15, LOC100043154, Pum2
Downstream geneF730043H23, Sdc1, Laptm4a, Matn3, Wdr35, Ttc32, LOC633030, LOC100042238, Osr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129E04.T7 (MSMg01no129_e04.b1)MSMg01-129E04.TJ (MSMg01no129_e04.g1)
ACCAG337315AG337316
length800714
length of high quality
(start - end)
---215 (73 - 287)
definitionCHROMAT_FILE: MSMg01no129_e04.b1 PHD_FILE: MSMg01no129_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:36 2005CHROMAT_FILE: MSMg01no129_e04.g1 PHD_FILE: MSMg01no129_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCTGGAATTCACACAACTTTGTCTTTCGTCGAGACGACGGGCGTCACT
GCGAAAGAGAAGTTGCTGATTTGCTTCAGACAGATGACCTACTCATAGTG
AAACCACAGATGTACTCTCTTGCTTTGTCAAGATTACAACCCCGAAATTT
ACAGGTCTCCATTAATCCCACCCTAGGGTCTCACACCTTTAACCCATGGC
CTCCTCCAGTTTGCCCTCTCTCTCCTAACATATCTATCCCTCTCAACTTC
TCCTAAGTGTGCCGCAACCTATGGTTACCATTCTCTACAGAACACACCCC
CCTAATCCTATACTATCCGACCATATTTTGATTTGGCTGAGCACCACCCA
CAAGCTGAATTTCTGTCGATTCTGTGATTCCTGGTATTTTACCTCCCACT
ATCTTTTAAGATACCCCCCCTTCTTGCCCCACCAACCTTGTCTTCACTTC
TTTTTTGTTTTAATCCAAATCTAACCCTCTCTATATTTCCCATCGCCAAG
CACTGCCTTATAAAATCCCAACCCCCTTTTTCTCCCCTCGCTTTCTAGAA
AACCCGATAATCTTCTCGACTTTTCAATCCTTCCCGACCCCCCTTACTGC
CTCTATTTTTCTCCCCTTATTATCCCCCTTACCCGCCTACTTTTATCCCC
CCTCTCTTTTCTTCCCTCTTTCCTATTCCCCCTATTTCCTCTTTTATCTT
CTTTTCCTCTCCCTTTCCCTTCCCCCCCCCAATTCTTCTTCTCCCCCATT

ATTGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAACTCTGTAGACCAACCAGGCTATCCTC
AAACTGGGAGATCTGCCTGCCTCTGTCACCACCTCCTAGTGAGTTTGGAT
ATAGAGCTAAGGACTAAAAGGAAGTCACAGGAGGTATTTAAAAACACACA
TACTCCGTTGTGTGTGTACACACCATTTGTGTATACAAGTTGGCAGGGAA
AGACAGGAATAAATTCCAGCTAAACGGGAGAGAGGAGTACAGGTAAGAGG
TAGGAGATGGAAATGTTGTCTTTTGTCTTTCTGCCTCTATGAGTTAAGTT
CTGGTTTTTTTGGGGTTCTCACACCGGGTTTCTCTGTGTAGCCCTGGTTG
TCCTGTAACTCACTCCGTATACCAAGATGGCCTCATTCTGGGAGATCCAC
TCTGCCTCTGCCTCTCTAGTGCTGTTATTACAGATGTGTGTCGAATCCTA
CTGGCTTGTTTTGATTTCTTTATGAAATGAATGCTTTCCTGACCCTGACT
CTCCCTTCCTTCTACCTTCCCAAAGCTAAGATTAATAGGTATACACCCTT
ATCCCCATTTTTGCATTTCCCAATTGACTCTCACGCCCATTTATGCCTAT
GAATTCGCCTTTTGCCATTCGTCACAGTGACCCCTTGCAATCTGCCCCTT
TCCCCCGCCCCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_e04.g1 MSMg01no129_e04.g1 CHROMAT_FILE:
MSMg01no129_e04.g1 PHD_FILE: MSMg01no129_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:37 2005
         (215 letters)



>mm_chr12_8763849_8764463
          Length = 615

 Score =  408 bits (211), Expect = e-118
 Identities = 214/215 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactctgtagaccaaccaggctatcctcaaactgggagatctgcctgcctctgtcaccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aactctgtagaccaaccaggctatcctcaaactgggagatctgcctgcctctgtcaccac 260

                                                                       
Query: 61  ctcctagtgagtttggatatagagctaaggactaaaaggaagtcacaggaggtatttaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcctagtgagtttggatatagagctaaggactaaaaggaagtcacaggaggtatttaaa 320

                                                                       
Query: 121 aacacacatactccgttgtgtgtgtacacaccatttgtgtatacaagttggcagggaaag 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcacacatactccgttgtgtgtgtacacaccatttgtgtatacaagttggcagggaaag 380

                                              
Query: 181 acaggaataaattccagctaaacgggagagaggag 215
           |||||||||||||||||||||||||||||||||||
Sbjct: 381 acaggaataaattccagctaaacgggagagaggag 415


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 615
Length adjustment: 9
Effective length of query: 206
Effective length of database: 606
Effective search space:   124836
Effective search space used:   124836
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)