BAC Information

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BAC

Clone NameMSMg01-130O09
Chromosome12 (Build37)
Map Location 121,041,529 - 121,041,721
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620665, Sp8, Abcb5, Itgb8, EG627557, LOC100043011, 4732474O15Rik, LOC668632
Downstream geneLOC668633, Gm528, LOC100043017
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130O09.T7 (MSMg01no130_o09.b1)MSMg01-130O09.TJ (MSMg01no130_o09.g1)
ACCAG338537AG338538
length719714
length of high quality
(start - end)
239 (75 - 313)197 (124 - 320)
definitionCHROMAT_FILE: MSMg01no130_o09.b1 PHD_FILE: MSMg01no130_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:55 2005CHROMAT_FILE: MSMg01no130_o09.g1 PHD_FILE: MSMg01no130_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAAGGCGCGGAA
TTCTCTAGTGTTTTCTTTCGGGACCATATATATACCATAGTACCATCTGC
AAAAAGTGATATTTTGACTTCTCTCTTTTCCAATTTGTATCCCCTTGATC
TCCTTTTGTTGTGGAATTGCTCTGGCTAGGACTTCAAGTACAATGTTTAA
TAGGTAGGGAGAAAGTGGGCAGCCTTGTCTAGTCCCTGATTCTACTAGGA
TTGCTTCCAGCTTCTCACCATTTACTTTGATATTCAGCTACTGGTTTGCT
GCAGATTGCTTTTATCACGTTTTTTTATGGGCCTTGAATTCCTGATCCTT
CCAAGACTTTTATCATGACTCGTCGTCCCATTTTGTCACATGCTTTCTTC
TTATCTTATGACACGACCATTTGGTTTTCTGTCTTTGAGTTCTTTTTATA
TAATGGATTACGTTGATGGATTTCTGCATATTAAACCATCTCTGCATTTC
TTGTTTTTCACCCACTTCTTCTCCATGTTTGACTATTTTAATCTGTTCTT
GCATTCTGATAGCGTTAATTTTTTCGAGTACTTTTGTATCCATATTCTTT
CCCCCAACTGTTCTGAAGCTCTCTATCTTTGACGGACCCCTTTGCGGTTT
ACGTACCTTACCATTTGTGCCATTTTACAACTGATTGTATTATTTTCCTC
CCTACTTCTTCCATCTGCG
ATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCCTCCCAGCCCCCAACCTATTTCCCTTGC
AGTCACCTGGAGTATATTGCCTGCCCTGAGTTAGCTTCATGATATTCCCA
TAGCTCCACTATCTGAAAACCACTCTGTTGGCCTCTACCAGGCCCACCAA
ATAAGGAACATCCATGTCCACCTAACAAGGAACAACCAGGTCTACCAAAG
AAGAAAATTCCAGGTTTACTAGACCAATAACACCCAGTCCACGGCTGTCC
ACCAGAGGCCTGCTACTTTTTTTAAGATCCAGGGAAAACAGATGGCTAAA
GTCTAGTGGATAACTCCCATACCTGACCACGGCAAAATGGCAGTTTTATA
GCAAAGCTATACCCATACAGAAAAAAAAGAATAACCTAAGGCGGCTGATT
CACAAGTAAATGGTCTTAAATACAACCTTATATAGATGATTGATTCCTTT
AACAGGAAATGAATAAATCTCTCAAAGAAATTCAGGAAAATAAAATCAAA
CAGGCAAGGCTTTTAACGATGATACTAATAAATCCCATTTATACAGGCGA
CTCAACTATATAACATTGTGCAAGACTTAAAAATGTAAATAGAACCAATA
AAAAAAACAGAACCCTGGAGATGAACAACTCCCATAGATCACACGACCCC
TTCATGCCAGTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_o09.g1 MSMg01no130_o09.g1 CHROMAT_FILE:
MSMg01no130_o09.g1 PHD_FILE: MSMg01no130_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:55 2005
         (197 letters)



>mm_chr12_121041329_121041925
          Length = 597

 Score =  358 bits (185), Expect = e-103
 Identities = 191/193 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccctgagttagcttcatgatattcccatagctccactatctgaaaaccactctgttggcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ccctgagttagcttcatgatattcccatagctccactatctgaaaaccactctgttggcc 334

                                                                       
Query: 61  tctaccaggcccaccaaataaggaacatccatgtccacctaacaaggaacaaccaggtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tctaccaggcccaccaaataaggaacatccatgtccacctaacaaggaacaaccaggtct 274

                                                                       
Query: 121 accaaagaagaaaattccaggtttactagaccaataacacccagtccacggctgtccacc 180
           |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 273 accaaagaagaaaattccaggtctactagaccaagaacacccagtccacggctgtccacc 214

                        
Query: 181 agaggcctgctac 193
           |||||||||||||
Sbjct: 213 agaggcctgctac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 597
Length adjustment: 8
Effective length of query: 189
Effective length of database: 589
Effective search space:   111321
Effective search space used:   111321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)