BAC Information

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BAC

Clone NameMSMg01-131C06
Chromosome12 (Build37)
Map Location 32,138,284 - 32,138,695
singlet/doubletsinglet
Overlap geneSlc26a3
Upstream geneTmem18, LOC100043055, Acp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786
Downstream geneCbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22, Hbp1, Prkar2b, Pik3cg, 2010109K11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131C06.T7 (MSMg01no131_c06.b1)MSMg01-131C06.TJ (MSMg01no131_c06.g1)
ACCAG338719AG338720
length705761
length of high quality
(start - end)
624 (82 - 705)49 (116 - 164)
definitionCHROMAT_FILE: MSMg01no131_c06.b1 PHD_FILE: MSMg01no131_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:15 2005CHROMAT_FILE: MSMg01no131_c06.g1 PHD_FILE: MSMg01no131_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAGAGGATCC
GCGGAATTCCAATTGCCTAAATAAGAATGTGAGGTGCAACTAAGAATGAT
ATAAAACAAAAAGGCAATAACAACCACAACAACAAAATCCAAACCATTGT
TTCAAACCCAACCCCACCAGCTGCCAAACCTAACTACCTACTTTTGATCC
CTGGGCTCCACTGGGTGGAAGAGAGAATCAAATCCTGAACTTCTTCTCCC
AATCCAAAATAAATAGATAAATGTAACAAAAAGGTAAAGAATAGCCCAAC
TTGAGACCCATCCCTCCAGCATGTTTCAGTTCCTGACACTATTCATGATA
CTGTGATGCTTGCAGACAGGAGTCCAGCATGACTGTCCCCTGAGAGGCTC
CACCCAGCACCTGACTGAAGCAGATGCAGAGACCCACAGCCAAACATTAA
ATAATGCTTTGGGATTCTTATGCAAGAGTTGGGGGAAGGATTGAAAACCC
TGAAGGGTGTAGGAACTCCACGGGAAGACCAACAGAGTCAGACTAACCTG
GACCCTTGGGGCCTCTCAGAGACTGAGCCACCAACCAAAGAACATACACA
GGCTGAACTGAGACCATGGCACATGGGTAGCAGATGGGCAGCTCAGTCTC
CATGTGGGTCCAACAACTGGAGTGAGGGCTGTCCCTAAAGCTGTTGCCTG
TCTGC
CCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGTGATGGTCCCCGGGGGATTCCCT
GGCTTTCATAAGCAGAATTCTGCTCCGAACCGGATGGCATGAGCCCTGAG
GCACAGTGAATGTGGCTGGTCACATGTGACGGCACGTCTGTCTAGCTAAT
GAGTTTTTGTTTGCTTTGACTGCAGCTTGTGACTGCCATCTGCAAGGGTC
TGCCAGTGCCTTCTGTGACACGATCACTGGCCAGTGCCACTGTTTCCAGG
GCATCTATGCTCGGCAGTGTGATCGATGTCTCCCTGGTTATTGGGGTTTT
CCCAGCTGCCAGCCCTGCCTGCGCAATGGCCATGCTCTAGACTGTGACAC
AGTGCCAGGGTAGTGTCTGAGCTGTCACGTCTTCTTCTCGTGTCATATCT
GCTAATGTTATGTGGTCTCTATCTTCTTTAAATTAAATATTATAATATTT
ATGATTGCTGACTCTTGACACCTATTTAACAGAATTTACCAGTTCGTAGG
TTATCCAAATCTACTCTATAATGAATTTGTCTTTATATCTCTTATTTTCA
TTTAGATTACTGACTCCTTTTTTTGGCCTCATTTAAATTTCCCCTACCAC
CCTCATATATATACCTCCCTGTAAAATTCCCACTTCCTTCTTCCTTTTCT
TTAATTATACCTAACTTTTTTCTTAAAGCTTACCACTCTTTCTCTCTGTC
TTTTTTTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_c06.b1 MSMg01no131_c06.b1 CHROMAT_FILE:
MSMg01no131_c06.b1 PHD_FILE: MSMg01no131_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:15 2005
         (624 letters)



>mm_chr12_32138284_32139307
          Length = 1024

 Score =  758 bits (392), Expect = 0.0
 Identities = 407/412 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggtgcaactaagaatgatataaaacaaaaaggcaataacaaccacaacaacaaaatcca 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 412 aggtgcaactaagaatgatataaaacaaaaaggcaataacaacaacaacaacaaaatcca 353

                                                                       
Query: 61  aaccattgtttcaaacccaaccccaccagctgccaaacctaactacctacttttgatccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 aaccattgtttcaaacccaaccccaccagctgccaaacctaactacctacttttgatccc 293

                                                                       
Query: 121 tgggctccactgggtggaagagagaatcaaatcctgaacttcttctcccaatccaaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tgggctccactgggtggaagagagaatcaaatcctgaacttcttctcccaatccaaaata 233

                                                                       
Query: 181 aatagataaatgtaacaaaaaggtaaagaatagcccaacttgagacccatccctccagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 aatagataaatgtaacaaaaaggtaaagaatagcccaacttgagacccatccctccagca 173

                                                                       
Query: 241 tgtttcagttcctgacactattcatgatactgtgatgcttgcagacaggagtccagcatg 300
           ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 tgcaccagttcctgacactattcatgatactgtgatgcttgcagacaggagtccagcatg 113

                                                                       
Query: 301 actgtcccctgagaggctccacccagcacctgactgaagcagatgcagagacccacagcc 360
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 112 actgtcccctgagaggctccacccagcagctgactgaagcagatgcagagacccacagcc 53

                                                               
Query: 361 aaacattaaataatgctttgggattcttatgcaagagttgggggaaggattg 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52  aaacattaaataatgctttgggattcttatgcaagagttgggggaaggattg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)