BAC Information

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BAC

Clone NameMSMg01-131E06
Chromosome12 (Build37)
Map Location 74,073,226 - 74,240,586
singlet/doubletdoublet
Overlap geneLOC100041234, Six1, Six4, Mnat1
Upstream geneDaam1, LOC666220, Gpr135, LOC100041239, 2810055F11Rik, 1200003C05Rik, 4930403N07Rik, Rtn1, Lrrc9, 1810048J11Rik, LOC209183, LOC100041323, Dhrs7, LOC100041157, 5033425G24Rik, Ppm1a, Six6os1, Six6
Downstream geneTrmt5, Slc38a6, EG666356, Tmem30b, 2210039B01Rik, Prkch, EG666385, LOC100041489, Hif1a, EG277089, Snapc1, Syt16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131E06.T7 (MSMg01no131_e06.b1)MSMg01-131E06.TJ (MSMg01no131_e06.g1)
ACCAG338812AG338813
length730772
length of high quality
(start - end)
294 (70 - 363)209 (73 - 281)
definitionCHROMAT_FILE: MSMg01no131_e06.b1 PHD_FILE: MSMg01no131_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:25 2005CHROMAT_FILE: MSMg01no131_e06.g1 PHD_FILE: MSMg01no131_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,240,334 - 74,240,586)(74,073,226 - 74,073,434)
sequence
GCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTCATGTCCCAACTGATGATTCAGTATTTAAGAATAGTTTATTC
CTGCTGGGTTTTATTCTTAACCCCAACGAAGTATATCTGGATGCACAGCA
CTGATTATTAATGGTTAGCAGGGTAAAGAGAGGAAGGTTGTTCATGCTGT
ATGGTTGGGCTAAAACATCACCCTGAATCCTATTATTATTAATTGTGTGC
ATGTCAATCAAAATAAAATTAAATGTAATAGACAAAAAAGGTTTGTGCTG
GCTTAAATAACTTTATAAATTGTTACAGCTCGGAATAATCTCAAAAACAC
TGAAAAAAAAATTTAAAATAAGACTAAGAGACTGAGAGCTAAAAACATTA
AGTCAGTAACACAGTGCTAGACTAATATGCATGTGGCAATGGATCCCATC
CTAACCCAGCAGGGGGTGGGGGAGAGAGGGAGAGAAGGAATGAATAATGG
AGGGGAGNNTTTTTNTTCTTTTTTTTTTNTTTTTTTTTTCTTTTTTTTTC
TTTTTCTTCCTCTTTTTTCTTTCTTTGTCGCCCCTTTTCCCCCTCCCCTT
TNTTCTTTTCTTTTTTCTCGCGCCGGTTTTTTGTTTTTTGCCGCTTCTTC
TTGTGCTCTTTTTTCCCTCTTTTCTTTCTCTTTCTCGCCCTCTCCCTTCC
CTCTCTCCTTTCTCCTCTTCCCTCTCCTTG
CAATAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCTTGAAATTCAAGATGGCAATAGTAGGACATCAGACTA
AATCCCTCTGAGCACCACTGAGGAACTGGCATCTTTTGAGTGGCTAGGGG
GAAAGTCACCTTTCAGCGTGGTGTTCAGTACATCTCCAGACTCTTAAAAA
TGACTTGTCTCTGGGGAGCATTACTGTCTCTTTAAATGGCTTGTTCTGCC
TTGAAAGCGACCTCACTTTGTCTAGATTAATAAGAGGCTGATCCGGATAG
CCAATGTGTATAGACACTTGTTTTTTTTTTCCCTACTTATCCTCATCTAA
AATAGAAATGTGTGTAAACCTATGAAACAATATTTTACCTAAGAAATATT
AACTCCGAGTGAAGGGTTCTAGCTCTAGAACACGAAGCTGGATAAAAGCT
TTTTATATGACCATGATCCTCCACCCACACACTTGGTCTATGCTACTTGT
TCATGAGTACTTACCTAATTCAATTCACACTCCTATCGTTGATGTGAGAG
AGCGAGACAATCTTTCCTCTTCTTTTCTTTATTTTCTTTTATTTACTCTC
CTCAATTACCCTCTTATTATTCTCTCCAATACCTCGTTCTATTTAGCCTC
CTCTTTTCCCTCCTCACCTCATCCCTTTATATTTATTCTTTATTAAACAC
ACTATTACTTTTTTTTTTTCCATTATTATTCTTATTTCTTCTTTCATATT
TATTATTATACCACAACACCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_e06.b1 MSMg01no131_e06.b1 CHROMAT_FILE:
MSMg01no131_e06.b1 PHD_FILE: MSMg01no131_e06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:25 2005
         (294 letters)



>mm_chr12_74240095_74240788
          Length = 694

 Score =  474 bits (245), Expect = e-138
 Identities = 251/253 (99%)
 Strand = Plus / Minus

                                                                       
Query: 40  ttttattcttaaccccaacgaagtatatctggatgcacagcactgattattaatggttag 99
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ttttattcttaacttcaacgaagtatatctggatgcacagcactgattattaatggttag 433

                                                                       
Query: 100 cagggtaaagagaggaaggttgttcatgctgtatggttgggctaaaacatcaccctgaat 159
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 cagggtaaagagaggaaggttgttcatgctgtatggttgggctaaaacatcaccctgaat 373

                                                                       
Query: 160 cctattattattaattgtgtgcatgtcaatcaaaataaaattaaatgtaatagacaaaaa 219
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 cctattattattaattgtgtgcatgtcaatcaaaataaaattaaatgtaatagacaaaaa 313

                                                                       
Query: 220 aggtttgtgctggcttaaataactttataaattgttacagctcggaataatctcaaaaac 279
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 aggtttgtgctggcttaaataactttataaattgttacagctcggaataatctcaaaaac 253

                        
Query: 280 actgaaaaaaaaa 292
           |||||||||||||
Sbjct: 252 actgaaaaaaaaa 240


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no131_e06.g1 MSMg01no131_e06.g1 CHROMAT_FILE:
MSMg01no131_e06.g1 PHD_FILE: MSMg01no131_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:25 2005
         (209 letters)



>mm_chr12_74073026_74073634
          Length = 609

 Score =  366 bits (189), Expect = e-106
 Identities = 204/209 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagatggcaatagtaggacatcagactaaatccctctgagcaccactgaggaactggcat 60
           ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 aagatggcaatagcaggacatcagactaaatccctctgagcaccgctgaggaactggcat 260

                                                                       
Query: 61  cttttgagtggctagggggaaagtcacctttcagcgtggtgttcagtacatctccagact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttttgagtggctagggggaaagtcacctttcagcgtggtgttcagtacatctccagact 320

                                                                       
Query: 121 cttaaaaatgacttgtctctggggagcattactgtctctttaaatggcttgttctgcctt 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcaaaaatgacttgtctctggggagcattactgtctctttaaatggcttgttctgcctt 380

                                        
Query: 181 gaaagcgacctcactttgtctagattaat 209
           ||||||| |||||||||||| ||||||||
Sbjct: 381 gaaagcgccctcactttgtcaagattaat 409


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 609
Length adjustment: 9
Effective length of query: 200
Effective length of database: 600
Effective search space:   120000
Effective search space used:   120000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)