Query= MSMg01no133_a15.b1 MSMg01no133_a15.b1 CHROMAT_FILE:
MSMg01no133_a15.b1 PHD_FILE: MSMg01no133_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:44 2005
(551 letters)
>mm_chr12_118378952_118379903
Length = 952
Score = 990 bits (512), Expect = 0.0
Identities = 542/552 (98%), Gaps = 1/552 (0%)
Strand = Plus / Plus
Query: 1 gaggccctaggctaccgtttcttcatacccaggatctccaagtaatctggtcataaactg 60
||||||||||||| || |||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 201 gaggccctaggcttccatttcttcatacccaggatctccaagtaatcaggttataaactg 260
Query: 61 tcactgaagatggtttcctaagccctcttcagctttccatccagtgtgaggtattcttgg 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 tcactgaagatggtttcctaagccctcttcagctctccatccagtgtgaggtattcttgg 320
Query: 121 ttctttgtggaggagaaagtctgaaaggattctcagaggccgaactcatcttggtaattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctttgtggaggagaaagtctgaaaggattctcagaggccgaactcatcttggtaattt 380
Query: 181 tcttagaaatagaatttctcattttatttaaggcatttcagacaacataaccactaggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttagaaatagaatttctcattttatttaaggcatttcagacaacataaccactaggaa 440
Query: 241 tttctgtacagaattgggtatcattgtcatttgtggtgagtgcccccatcagagacccca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttctgtacagaattgggtatcattgtcatttgtggtgagtgcccccatcagagacccca 500
Query: 301 gggtatcctctgacccagcatccctgtcatggtcacaggatagaagctcaggactcctct 360
||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 gggtaccctctgacccggcatccctgtcatggtcacaggatagaagctcaggattcctct 560
Query: 361 tctgttgtgcaggagccaggtcttag-cacaatgccccaagtggcctcttgccacatcat 419
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 tctgctgtgcaggagccaggtcttaggcacaatgccccaagtggcctcttgccacatcat 620
Query: 420 tctggaagggtgtcagttctcgggtggcaattaatctccatctaaagcctgttcggttgc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctggaagggtgtcagttctcgggtggcaattaatctccatctaaagcctgttcggttgc 680
Query: 480 caagctctggcagagaaataaatggaagaacatttccagctcctgatggtgacttttatt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caagctctggcagagaaataaatggaagaacatttccagctcctgatggtgacttttatt 740
Query: 540 gagccttgcttg 551
||||||||||||
Sbjct: 741 gagccttgcttg 752
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 952
Length adjustment: 10
Effective length of query: 541
Effective length of database: 942
Effective search space: 509622
Effective search space used: 509622
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no133_a15.g1 MSMg01no133_a15.g1 CHROMAT_FILE:
MSMg01no133_a15.g1 PHD_FILE: MSMg01no133_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:44 2005
(550 letters)
>mm_chr12_118522091_118523041
Length = 951
Score = 996 bits (515), Expect = 0.0
Identities = 542/551 (98%), Gaps = 1/551 (0%)
Strand = Plus / Minus
Query: 1 caggctgctgcaggtggctgcgtggagctgtttgtctggcctggaccgcacagcctgtga 60
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 751 caggctgctgcaggtggctgcgtggagcagtttgtctggcctggactgcacagcctgtga 692
Query: 61 caaagccagtgtgctgtgtgctgtgtgagagctgagtgctgaggaaagggagcgaggaaa 120
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 691 caaagccagtgtgctgtgtgctgtgtgagagctgagtgctaaggaaagggagtgaggaaa 632
Query: 121 ggttggagaaggaggaaagtgcctccccccaactctgaagggtgttgggataggggtgct 180
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 ggttgaagaaggaggaaagcgcctccccccaactctgaagggtgttgggataggggtgct 572
Query: 181 gtgagctgggggttcagagtagaagctctgagtgctat-gggggggcagttatgacaaac 239
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 571 gtgagctgggggttcagagtagaagctctgagtgctatggggggggcagttatgacaaac 512
Query: 240 catcaggggctcagggaggtgggatccactctcagagttttcctccatgtccttcttttc 299
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 511 catcaggggcacagggaggtgggatccactctcagagttttcctccatgtcctgcttttc 452
Query: 300 ttgaggcctccagagccccaggaggtgctggtgcagatccaagtgggtcagaactcacag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ttgaggcctccagagccccaggaggtgctggtgcagatccaagtgggtcagaactcacag 392
Query: 360 tcagccacccctctttcccttccactaaattctccacagccttccatggtcaaaccactg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tcagccacccctctttcccttccactaaattctccacagccttccatggtcaaaccactg 332
Query: 420 gagaaatggactaactagggctaaggtttcaagtttctcaggccaggttgtggcagtgta 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gagaaatggactaactagggctaaggtttcaagtttctcaggccaggttgtggcagtgta 272
Query: 480 tggggacatgcactcagactaacagtaggagcaattcataatgcatgggaatagtcaaga 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tggggacatgcactcagactaacagtaggagcaattcataatgcatgggaatagtcaaga 212
Query: 540 atggtgcagtc 550
|||||||||||
Sbjct: 211 atggtgcagtc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 951
Length adjustment: 10
Effective length of query: 540
Effective length of database: 941
Effective search space: 508140
Effective search space used: 508140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
