Query= MSMg01no133_e17.b1 MSMg01no133_e17.b1 CHROMAT_FILE:
MSMg01no133_e17.b1 PHD_FILE: MSMg01no133_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:04 2005
(542 letters)
>mm_chr12_56066195_56067133
Length = 939
Score = 982 bits (508), Expect = 0.0
Identities = 533/542 (98%), Gaps = 3/542 (0%)
Strand = Plus / Minus
Query: 1 atcagttttagcatcatggtgacccacaggcctgaaatagtggtgcttgtccctagtttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 atcagttttagcatcatggtgacccacaggcctgaaatagtggtgcttgtccctagtttc 555
Query: 61 agaacttgtgaggcagcggtggaagatcctgcaagatgagaccagcatggtctatgttgg 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 agaacttgtgaggcagtggtggaagatcctgcaagatgagaccagcatggtctatgttgg 495
Query: 121 gaatccccggcctgcctgggctgtgcataatgaggctttgtctcagaaaaggaaaagaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gaatccccggcctgcctgggctgtgcataatgaggctttgtctcagaaaaggaaaagaga 435
Query: 181 aaggtggccaacttactactactactattaacatttcaaccattgcaatattttctcagt 240
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 434 aaggtggccaacttactactact-c--ttaacatttcaaccattgcaatattttctcagt 378
Query: 241 aactcggactagtaaaagaaaatttgaacaaagacgtgtaaggagtgggcactcaagatg 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 377 aactcggactagtaaaagaaaatttgaacaaagacatgtaaggagtgggcactcaagatg 318
Query: 301 tgatacagttagaagtgagaaaatggacatttcctcttggactttttttatgtttatgtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tgatacagttagaagtgagaaaatggacatttcctcttggactttttttatgtttatgtg 258
Query: 361 tcttgagtacatggtcccaggagtcattcctcacctgccatcgtattgagacaggtttgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tcttgagtacatggtcccaggagtcattcctcacctgccatcgtattgagacaggtttgc 198
Query: 421 tacatccactgcggtagtgacacgtgcgacaggccccaaaaacctgggcgctgtcccgac 480
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 197 tacatccactccggtagtgacacgtgcgacaggccccaaaaacctgggcgctgtccggag 138
Query: 481 gcgaaaagttcacggaaacttattctcctggaaccgtggcatcctatataatgaatgctc 540
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 137 gcgaaaagttcacggaaacttagtctcctggaaccgtggcatcctatataatgaatgctc 78
Query: 541 ca 542
||
Sbjct: 77 ca 76
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 939
Length adjustment: 10
Effective length of query: 532
Effective length of database: 929
Effective search space: 494228
Effective search space used: 494228
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no133_e17.g1 MSMg01no133_e17.g1 CHROMAT_FILE:
MSMg01no133_e17.g1 PHD_FILE: MSMg01no133_e17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:04 2005
(559 letters)
>mm_chr12_55927851_55928809
Length = 959
Score = 1036 bits (536), Expect = 0.0
Identities = 554/560 (98%), Gaps = 1/560 (0%)
Strand = Plus / Plus
Query: 1 ctttgaccttacctcaagctctcccctggaactgcagcgatacaaggctctgctctccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttgaccttacctcaagctctcccctggaactgcagcgatacaaggctctgctctccct 260
Query: 61 gccctttgagttctcagatgcgcctcctttgctcggcaggtccctgacaggcagcatcat 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 gccctttgagttctcagatgcgcctcctttgctcggcaggtccctgacaggcagcagcat 320
Query: 121 ctctggatcccttgcatgtgaactgtgttggagtcactgtggggtgggccatggactgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctggatcccttgcatgtgaactgtgttggagtcactgtggggtgggccatggactgtg 380
Query: 181 aggtgataacctttgagcatccctcaaagtcttgtcttcttggtgcttcccagagagcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggtgataacctttgagcatccctcaaagtcttgtcttcttggtgcttcccagagagcct 440
Query: 241 gccattgcgtgaggaggggagtcagcgtgagatgattctaggggcctttctaaatcatgc 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccattgcatgaggaggggagtcagcgtgagatgattctaggggcctttctaaatcatgc 500
Query: 301 ctgcgtgcgcgctggttagtttt-gtcaacttgacacaagctagggtcatctgggaagag 359
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgcgtgcgcgctggttagtttttgtcaacttgacacaagctagggtcatctgggaagag 560
Query: 360 ggaactgaagagctagcctgtctccatctcaggcttaaaggccatctaggaaagataaac 419
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggaactgaagagctagcttgtctccatctcaggcttaaaggccatctaggaaagataaac 620
Query: 420 tgggttcaatcctgtttatttctagacctctgcttcttaaggattgggttatgccccaac 479
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgggttcaatcctgtttatttttagacctctgcttcttaaggattgggttatgccccaac 680
Query: 480 tgtaacctttaataggttgttatagttaatttggccatgctgattggtgtcggtagtctt 539
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tataacctttaataggttgttatagttaatttggccatgctgattggtgtcggtagtctt 740
Query: 540 tctcctctcctctttgggat 559
||||||||||||||||||||
Sbjct: 741 tctcctctcctctttgggat 760
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
