BAC Information

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BAC

Clone NameMSMg01-134O18
Chromosome12 (Build37)
Map Location 113,455,849 - 113,550,105
singlet/doubletdoublet
Overlap genenone
Upstream geneTraf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a
Downstream geneA730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6, Pacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh, Igh-2, Gm900, Igh-1b, Igh-3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134O18.T7 (MSMg01no134_o18.b1)MSMg01-134O18.TJ (MSMg01no134_o18.g1)
ACCAG341517AG341518
length1,1871,163
length of high quality
(start - end)		536 (123 - 658)535 (90 - 624)
definitionCHROMAT_FILE: MSMg01no134_o18.b1 PHD_FILE: MSMg01no134_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:50 2005CHROMAT_FILE: MSMg01no134_o18.g1 PHD_FILE: MSMg01no134_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,549,570 - 113,550,105)(113,455,849 - 113,456,383)
sequence
NCCCGGCTTTTTTTNGGCATTGGGCGCAACGACTCCTATGGGAGAGGATC
CGCGGAATTCACTAGTTTAAGATCACCCATTAATTGTTCAGACTAGGTGA
CAGTCTGCTGACAAAGCCTTCTGAAGGCTTGGAGGCAGAAAGGTAGGAGA
GAGTGAAGGAGGTGGCTCTGGGCCATGGAATCCAGGCAGACTCCAAGGGC
CAGAGACAGGTACATTCTGGGATTTTCACCCTAAAATCAAGGTCTTCCCA
GCTGATGCCTTCTCTGAGGTATGCCTAGCTCATAAACCCAGAGGGATGTT
TCTGTCCCGGTGTGGCTCAGGCCACGTTGTGAGTCCCAGGTAGAACCTAG
GCTCTCTGCATGGGGTGTCTGTAACCTTGGGTTAGAACCTGAGTGGGATA
GGACAGGAGGGGTCAGAGAGTTCTGCAGAAATTGGGATGGAAGCTGGGGG
CATGCAGATCGGTGGGCAGGGGCAGGAAGGTGCCAGGGTACAGACGCTGC
TACCTCAGACTCACGGAGGATGTATCTGAGGGAGAGCTAAGGTGTGGCAT
CTTAGCTGGCCAAAGTCAGCTGGAGGGACCCCAGGAAAAAGGAGCGTGGG
CAGAGCCTCATGTAGGGAGTCAGTAATGAGGCTTTTGATGGGCTCTTTCC
CACCCCCCGTCTCATCCCATTCTCGTCCTCATCCCCAAAGTATGTTTTCT
TCTATTATTCCTTCCTTTCTCAGTATCTGTTATTCTTGATTTCTTATATT
CATTTCTATGCTTTTCCCTTATAAGCCATTTATCTTTTTGTTCTTACTGT
TTTTCTCTTCAACTATTGTCTTGCAACTCCCTTCTTCTCTTCCTGCTTTC
CTGTATTCTTGCTTCATTCTTCTTCTCTATCATTAATTCTTGTTTTTTTT
ATTCTTTCTTCTGTCATTATTCACATTCGCCCTTTCTATTTTTTTTTTCT
TTTCTCTGTTTAATTTTTCTTCTCATTCTTCTTCCTTTCTTTATCTTTCT
TCTCTCTTTCTCTCTTTTTCTTTTCTCCCTCTTTATCTTTCTTCTCTTTC
TTCTTCTCTATTATTTCCTTTTTCTTTTCTCTCTCCTAATTTTATTTCTA
TTATTTCTCCAATTTTCTTCTTCATTCTTATTCTTTCCATATCTAATCTC
TTTTTTCCTTTTTCTATTGTCTTCATATCTATACTCT

NCCAGGTTTNTTNNNAAGATGGGAGGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTAATCTGTAGCCTCCACAAG
CCTTGAACTGGCAATCCTCCTGCTACACCTCCCAGCCCCCACGCTCTTGG
AGGTACTTCTCATTGATAGTGTCTTCTCTGATCTTGCTTATACCCTCTGG
GTGTTTTTAGCTGGGGGTAGGTGCTGTGGTGATCCTAAGCGGGTAAGATG
TTTGTCAGTTATGTCCAGTTTGCCCCTGCCTCTCCAGCAGGCTGGCTGCT
GGCAGCTTGTTCTGGACAAAGGGCAGATTCTGTCCTGGAGGGATCAGGCT
GGCAGCAGGGAGGGGCAGCTGATTGTGAAACAGCACTCTCTGCTCTCCAT
ACCTCCTGCCTGCTGCTTTCTGCTGGGAGACCTCTTAGCACCTTGGAATG
AACTATAAAGGGGCCGATGGCAAGGCCAGCGGGACACTGACTATGTCTGG
GTTTGGGCAGTGATAAGAGGCCCTGGAGCCCTGATGAGAGGAACTGGCAA
GACCTTGCTCCTGCTCTTGTGCACCTGCAGGCTAGCCCCAGCTCCTCTCC
TGCAGATGACACTGAAGTCAGGGGCTGGTGTTTTAGGATCTTTAGGGCCA
GTAAACCTACAAACTTGCAAAGACATAGTTCTTCACTTGGGAGAACCAGG
CCCGCAGAATAAAGAGGCATGAGAAAGCCAGTGCTCTTGTGATGGACATT
GGGCACCCTCAATGACAGTCCCCTTTACTTGGCTTACCATGTCTTCGGAG
TTTATGTTTTTCTCTCTTTATCCTTCTCTCTCTTTTTTTTTTTTTTATTA
TTTTCTTTTTTTTTTTTTTCTCTTCTTTTTTTTTCTTTTCTTTCTTTTTT
ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTCTCTTTTCTTTTTCCA
ATTTTTCTTTCTTTTTTCTCTTTTTCTTTTTTCTTATATTTTTCTCCCCT
TATCTTTTCTTTTTTCTTTTTCTCTTATTTCTTTTCTTATTCTTTTTTTA
TCTTTTTCTTCTTTTTATTTAATTTCTATCTTCTCCTTCATCTCTTTCTT
TCTCTCTTTTCCTTTTATCCTTTTCTTTTCTTTATTCATTTATTCTCTTC
TTTTATTTTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_o18.b1 MSMg01no134_o18.b1 CHROMAT_FILE:
MSMg01no134_o18.b1 PHD_FILE: MSMg01no134_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:50 2005
         (536 letters)



>mm_chr12_113549370_113550305
          Length = 936

 Score = 1036 bits (536), Expect = 0.0
 Identities = 536/536 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaggcttggaggcagaaaggtaggagagagtgaaggaggtggctctgggccatggaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 gaaggcttggaggcagaaaggtaggagagagtgaaggaggtggctctgggccatggaatc 677

                                                                       
Query: 61  caggcagactccaagggccagagacaggtacattctgggattttcaccctaaaatcaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 caggcagactccaagggccagagacaggtacattctgggattttcaccctaaaatcaagg 617

                                                                       
Query: 121 tcttcccagctgatgccttctctgaggtatgcctagctcataaacccagagggatgtttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tcttcccagctgatgccttctctgaggtatgcctagctcataaacccagagggatgtttc 557

                                                                       
Query: 181 tgtcccggtgtggctcaggccacgttgtgagtcccaggtagaacctaggctctctgcatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tgtcccggtgtggctcaggccacgttgtgagtcccaggtagaacctaggctctctgcatg 497

                                                                       
Query: 241 gggtgtctgtaaccttgggttagaacctgagtgggataggacaggaggggtcagagagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gggtgtctgtaaccttgggttagaacctgagtgggataggacaggaggggtcagagagtt 437

                                                                       
Query: 301 ctgcagaaattgggatggaagctgggggcatgcagatcggtgggcaggggcaggaaggtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ctgcagaaattgggatggaagctgggggcatgcagatcggtgggcaggggcaggaaggtg 377

                                                                       
Query: 361 ccagggtacagacgctgctacctcagactcacggaggatgtatctgagggagagctaagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ccagggtacagacgctgctacctcagactcacggaggatgtatctgagggagagctaagg 317

                                                                       
Query: 421 tgtggcatcttagctggccaaagtcagctggagggaccccaggaaaaaggagcgtgggca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tgtggcatcttagctggccaaagtcagctggagggaccccaggaaaaaggagcgtgggca 257

                                                                   
Query: 481 gagcctcatgtagggagtcagtaatgaggcttttgatgggctctttcccacccccc 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gagcctcatgtagggagtcagtaatgaggcttttgatgggctctttcccacccccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no134_o18.g1 MSMg01no134_o18.g1 CHROMAT_FILE:
MSMg01no134_o18.g1 PHD_FILE: MSMg01no134_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:50 2005
         (535 letters)



>mm_chr12_113455649_113456583
          Length = 935

 Score = 1027 bits (531), Expect = 0.0
 Identities = 534/535 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcctccacaagccttgaactggcaatcctcctgctacacctcccagcccccacgctcttg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 gcctccacaagccttgaactggcaatcctcctgctacacctcccagcccccaagctcttg 260

                                                                       
Query: 61  gaggtacttctcattgatagtgtcttctctgatcttgcttataccctctgggtgttttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggtacttctcattgatagtgtcttctctgatcttgcttataccctctgggtgttttta 320

                                                                       
Query: 121 gctgggggtaggtgctgtggtgatcctaagcgggtaagatgtttgtcagttatgtccagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgggggtaggtgctgtggtgatcctaagcgggtaagatgtttgtcagttatgtccagt 380

                                                                       
Query: 181 ttgcccctgcctctccagcaggctggctgctggcagcttgttctggacaaagggcagatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgcccctgcctctccagcaggctggctgctggcagcttgttctggacaaagggcagatt 440

                                                                       
Query: 241 ctgtcctggagggatcaggctggcagcagggaggggcagctgattgtgaaacagcactct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtcctggagggatcaggctggcagcagggaggggcagctgattgtgaaacagcactct 500

                                                                       
Query: 301 ctgctctccatacctcctgcctgctgctttctgctgggagacctcttagcaccttggaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgctctccatacctcctgcctgctgctttctgctgggagacctcttagcaccttggaat 560

                                                                       
Query: 361 gaactataaaggggccgatggcaaggccagcgggacactgactatgtctgggtttgggca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaactataaaggggccgatggcaaggccagcgggacactgactatgtctgggtttgggca 620

                                                                       
Query: 421 gtgataagaggccctggagccctgatgagaggaactggcaagaccttgctcctgctcttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgataagaggccctggagccctgatgagaggaactggcaagaccttgctcctgctcttg 680

                                                                  
Query: 481 tgcacctgcaggctagccccagctcctctcctgcagatgacactgaagtcagggg 535
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgcacctgcaggctagccccagctcctctcctgcagatgacactgaagtcagggg 735


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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