BAC Information

Click to search

BAC

Clone NameMSMg01-135A07
Chromosome12 (Build37)
Map Location 78,828,352 - 78,967,313
singlet/doubletdoublet
Overlap geneLOC666659
Upstream geneChurc1, Gpx2, Rab15, Fntb, Max, LOC100041765, LOC100041772, Fut8, LOC230765
Downstream geneEG626215, Gphn, 4921509E07Rik, Mpp5, Atp6v1d, LOC100041878, Eif2s1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135A07.T7 (MSMg01no135_a07.b1)MSMg01-135A07.TJ (MSMg01no135_a07.g1)
ACCAG341589AG341590
length729710
length of high quality
(start - end)
391 (46 - 436)637 (74 - 710)
definitionCHROMAT_FILE: MSMg01no135_a07.b1 PHD_FILE: MSMg01no135_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:01 2005CHROMAT_FILE: MSMg01no135_a07.g1 PHD_FILE: MSMg01no135_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,828,352 - 78,828,726)(78,966,686 - 78,967,313)
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTCACATCCCTACCCCTCCCCTAGTAGTGCCTGTTACCAAGTAG
ATGCTCAGTAGTAGTTAATTAAGTAACCTTGAATTTTTAAAATCCCTCTC
ACTTCATGAAATTGGATAAAAGTGAACAAACAGATAAATCAATGGATTCA
TTAAAAAAAACCTGTATGATCTTTTTCCTGCAATTATTAAATATGACCAC
CTAGTGCCAGGAGATGCTGAATTGATTGTGTATGCTGTATTAGGCACAAG
CGCCTTCCCTGAGAGTCAAATTATGTCTTTTGGGCTAGAGATTAACCATA
TTGGGGCAGTATTTGAACAACATGTACGAGGGGACCTTGGGATGAACCCC
AGAACTGGAGGGGGTGGTGGTGGAAGTAGTTTGCCNNACTTTATGCTTCC
TTCTTTATTATTAATTATGTATTTGTATAAAATATCCCATATGTATCATC
TTGTAAAGATGACCCTTAAAGTTTTTTATTTCGTTATTAATCCTTACTTA
CAAATAATCCCTCATTCTATGACTATGGCACCATGTATTCCTCTTTTATT
ATCTTGTTTTTTATCTCTTCCTTCTATGCGCCAATACTTTTTAATATAAT
ATTCTTGAAAGATTTTGTAAAACAGTATATTGCTTATTTACCCCATATAT
TTCTTTAATCTATTTTTTTTATTTCTTCA
AATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGACCTATTAACTTCAGGGACACCCTA
GGTAAGGCCTTTCCTCTTCAATGATCTGGTTTCAGGGGAAGTGAAAACCT
GCAAATGTCTCCTTAATGTCTCTTGATGGTACTTAATTGCTGCCTACTTT
GTGTCTAACTGAAACTCTGCAAAAGGCACAGAGTAACCCCAGGCTCTGGA
GTACGATTTCATTTGGATTCTTTCTCTTTCAGGCCCTCCTATCTGTCACC
TGGAGTTGAGAGCAGTCCTCCTTTCTTTCTTCTGGTTTTCTCTGTTACTG
GTGCTAAGAGTCTTGACATTTTAGACTTCATCAGAAAATCTTGGTTCCTG
AGTTTCTAGAGTTTCTAAAATAGATGTGTAGGATTGACTCATTTCTAAGA
CCCCTACTTGCCACAGGGGGCTGCTACTGTACTTGATATACTTCATTTGC
TTTGTATAAATGTATATGATGTATATATGTCCATGTATATATGTGTATAC
ATTTAGTGGCCTTTGTGGAAGATGGGGGAAGACAGGGTAGAAGTCTCCTT
CCTTCACTCAGCACTTCAAACTCAGGGTACCCAGGACTTCCTTACACAAC
ATATCACCTGAACACAGAGAGCACCTCACAGAATGGTTGGGTTCTCATTT
CACAAGTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_a07.b1 MSMg01no135_a07.b1 CHROMAT_FILE:
MSMg01no135_a07.b1 PHD_FILE: MSMg01no135_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:01 2005
         (391 letters)



>mm_chr12_78828137_78828927
          Length = 791

 Score =  638 bits (330), Expect = 0.0
 Identities = 367/386 (95%), Gaps = 11/386 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattcacatccctacccctcccctagtagtgcctgttaccaagtagatgctcagt 64
           ||||||||||||||           ||||||||||||| |||||||||||||||||||||
Sbjct: 216 gaattcattcacat-----------ccctagtagtgcccgttaccaagtagatgctcagt 264

                                                                       
Query: 65  agtagttaattaagtaaccttgaatttttaaaatccctctcacttcatgaaattggataa 124
           |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtaattaattaagtaaacttgaatttttaaaatccctctcacttcatgaaattggataa 324

                                                                       
Query: 125 aagtgaacaaacagataaatcaatggattcattaaaaaaaacctgtatgatctttttcct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagtgaacaaacagataaatcaatggattcattaaaaaaaacctgtatgatctttttcct 384

                                                                       
Query: 185 gcaattattaaatatgaccacctagtgccaggagatgctgaattgattgtgtatgctgta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcaattattaaatatgaccacctagtgccaggagatgctgaattgattgtgtatgctgta 444

                                                                       
Query: 245 ttaggcacaagcgccttccctgagagtcaaattatgtcttttgggctagagattaaccat 304
           ||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 445 ttaggtacaagcaccttccctgagattcaaattatgtcttttgggctagagattaaccat 504

                                                                       
Query: 305 attggggcagtatttgaacaacatgtacgaggggaccttgggatgaaccccagaactgga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 505 attggggcagtatttgaacaacatgtacgaggggaccttgggatgaaccccagaactaga 564

                                     
Query: 365 gggggtggtggtggaagtagtttgcc 390
           ||||||||||||||||||| ||||||
Sbjct: 565 gggggtggtggtggaagtaatttgcc 590


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space:   298724
Effective search space used:   298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no135_a07.g1 MSMg01no135_a07.g1 CHROMAT_FILE:
MSMg01no135_a07.g1 PHD_FILE: MSMg01no135_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:01 2005
         (637 letters)



>mm_chr12_78966686_78967721
          Length = 1036

 Score = 1152 bits (596), Expect = 0.0
 Identities = 621/630 (98%), Gaps = 3/630 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agacctattaacttcagggacaccctaggtaaggcctttcctcttcaatgatctggtttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 agacctattaacttcagggacaccctaggtaaggcctttcctcttcaatgatctggtttc 569

                                                                       
Query: 61  aggggaagtgaaaacctgcaaatgtctccttaatgtctcttgatggtacttaattgctgc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 568 aggggaagtgaaaacctgcaaatgtctccttaatgtctcttgatggtactcaattgctgc 509

                                                                       
Query: 121 ctactttgtgtctaactgaaactctgcaaaaggcacagagtaaccccaggctctggagta 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 508 ctactttgtgtctaactgaaactctgcaaaaggcacagagtaaccccaggctctggggta 449

                                                                       
Query: 181 cgatttca-tttggattctttctctttcaggccctcctatctgtcacctggagttgagag 239
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cgatttcattttggattctttctctttcaggccctcctatctgtcacctggagttgagag 389

                                                                       
Query: 240 cagtcctcctttctttcttctggttttctctgttactggtgctaagagtcttgacatttt 299
           ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 388 cagtcctcctttctttcttctggttt--tctgttactggtgctaagagtcttgacatttt 331

                                                                       
Query: 300 agacttcatcagaaaatcttggttcctgagtttctagagtttctaaaatagatgtgtagg 359
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 agacctcatcagaaaatcttggttcctgagtttctagagtttctaaaatagatgtgtagg 271

                                                                       
Query: 360 attgactcatttctaagacccctacttgccacagggggctgctactgtacttgatatact 419
           | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 270 actgactcatttctaagacccctacttgccacagggggctgctactgtacttgatacact 211

                                                                       
Query: 420 tcatttgctttgtataaatgtatatgatgtatatatgtccatgtatatatgtgtatacat 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 tcatttgctttgtataaatgtatatgatgtatatatgtccatgtatatatgtgtatacat 151

                                                                       
Query: 480 ttagtggcctttgtggaagatgggggaagacagggtagaagtctccttccttcactcagc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 ttagtggcctttgtggaagatgggggaagacagggtagaagtctccttccttcactcagc 91

                                                                       
Query: 540 acttcaaactcagggtacccaggacttccttacacaacatatcacctgaacacagagagc 599
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90  acttcaaactcggggtacccaggacttccttacacaacatatcacctgaacacagagagc 31

                                         
Query: 600 acctcacagaatggttgggttctcatttca 629
           ||||||||||||||||||||||||||||||
Sbjct: 30  acctcacagaatggttgggttctcatttca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1036
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1026
Effective search space:   643302
Effective search space used:   643302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)