Query= MSMg01no135_b13.b1 MSMg01no135_b13.b1 CHROMAT_FILE:
MSMg01no135_b13.b1 PHD_FILE: MSMg01no135_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:08 2005
(392 letters)
>mm_chr12_86996021_86996812
Length = 792
Score = 601 bits (311), Expect = e-176
Identities = 358/393 (91%), Gaps = 30/393 (7%)
Strand = Plus / Plus
Query: 27 gcgtcacacctcaacacagagagaagtgtagcccagtagtaagcccagggaaagggaaat 86
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 227 gcgtcacacctcaacacagagagaaatgtagcccagtagtaagcccagggaaagggaaat 286
Query: 87 ggattgagtgagcaaccaactattatctatgtgaagattctgtgatccctctctctctct 146
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ggattgagtgagcagccaactattatctatgtgaagattctgtgatccctctctctctct 346
Query: 147 ------------------------------ttctctctcttttaaagatttatttatctt 176
||||||||||||||||||||||||||||||
Sbjct: 347 ctttctttctctttctctttctctctctctttctctctcttttaaagatttatttatctt 406
Query: 177 atgtatatgatacactgtagctgtacagatggttgtgagcctttatgtggttgttgggaa 236
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 407 atgtatatgatacactgtagctgtacagatggttgtgagcctttatgtggttgtggggaa 466
Query: 237 ttgaattttaacacctctgctcactccagtcagccctgctcactccggtcaactccactc 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ttgaattttaacacctctgctcactccagtcagccctgctcactccggtcaactccactc 526
Query: 297 actcaagcccaaagatgtatttattatacataagtacactgtagctgtcttctgactcac 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 actcaagcccaaagatgtatttattatacataagtacactgtagctgtcttctgactcac 586
Query: 357 cagaggagggcgtcacacctcattacggatggt 389
||||||||||||||| | |||||||||||||||
Sbjct: 587 cagaggagggcgtcagatctcattacggatggt 619
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space: 299889
Effective search space used: 299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no135_b13.g1 MSMg01no135_b13.g1 CHROMAT_FILE:
MSMg01no135_b13.g1 PHD_FILE: MSMg01no135_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:08 2005
(624 letters)
>mm_chr12_87155079_87156108
Length = 1030
Score = 1164 bits (602), Expect = 0.0
Identities = 621/630 (98%), Gaps = 6/630 (0%)
Strand = Plus / Minus
Query: 1 cataagaaagttaggtgtttgaatcaagaggtagagctaggtagatgataattaaataga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 cataagaaagttaggtgtttgaatcaagaggtagagctaggtagatgataattaaataga 771
Query: 61 tcagaaagatcttcctgagctt--tgggggggggggtcctcagctgagacttaaatgccc 118
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 770 tcagaaagatcttcctgagcttggggggggggggggtcctcagctgagacttaaatgccc 711
Query: 119 agaaggtgggtgtcttgagattcaatgtccagaaggttgtttgaagcattaaatgtcatt 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 710 agaaggtgggtgtcttgagattcaatgtccagaaggttgtttgaagcattaaatgccatt 651
Query: 179 gaggcattttgagcaaaaagagcagcagctgttgaaggactgagcaccgtgaagctacaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gaggcattttgagcaaaaagagcagcagctgttgaaggactgagcaccgtgaagctacaa 591
Query: 239 gagggagaaggctgtacctgtgaaaggctggaggtcagaggaggaagtagctcacaaagg 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gagggagaaggctgtacctgtgaaaggctggaggtcagaggaggaagtagctcacaaagg 531
Query: 299 taaggagatggctgatgtcttagttaagtacatagagagcatcagcgctttaagggggaa 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 taaggagatggctgatgtcttagttaagtacatagagagcatcagcgctttaagggggaa 471
Query: 359 ttttaccttaaatgactttagacagtaaaaatgccgtggctgttgtagc----aaaaaaa 414
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 470 ttttaccttaaatgactttagacagtaaaaatgccgtggctgttgtagcaaaaaaaaaaa 411
Query: 415 aaaaaagtgggcttcccggggtttggtggtgcttcggtcgggtctccggctctcattcag 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 aaaaaagtgggcttcccggggtttggtggtgcttcggtcgggtctccggctctcattcag 351
Query: 475 tgcagtccttccagctttgcccagctctggcttgtgattcaggctggcttcacttgtaag 534
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 350 tgcagtccttccagctttgcccaactctggcttgtgattcaggctggcttcacttgtaag 291
Query: 535 taccaaaagagaatgtagttccagacctcagatccccacagcaccagaaaggcagcccaa 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 taccaaaagagaatgtagttccagacctcagatccccacagcaccagaaaggcagcccaa 231
Query: 595 tgggaagagttacctttatcctctcgctgt 624
||||||||||||||||||||||||||||||
Sbjct: 230 tgggaagagttacctttatcctctcgctgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1030
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1020
Effective search space: 626280
Effective search space used: 626280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
