Query= MSMg01no135_c09.b1 MSMg01no135_c09.b1 CHROMAT_FILE:
MSMg01no135_c09.b1 PHD_FILE: MSMg01no135_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:12 2005
(590 letters)
>mm_chr12_33686923_33687913
Length = 991
Score = 984 bits (509), Expect = 0.0
Identities = 569/589 (96%), Gaps = 3/589 (0%)
Strand = Plus / Plus
Query: 4 ggaattctgggatacaaagtgcagcatctctttaactactccacctatcgatttagcctg 63
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgggatagaaagtgcagcatctctttaactactccacctatcgatttagcctg 263
Query: 64 gcttaaagtgggcccgcttccctagaggcagccccttagccagatgatcgacctcactga 123
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcttaaagtgggcctgcttccctagaggcagccccttagccagatgatcgacctcactga 323
Query: 124 ctgaattcac-tttttttttcctatcttgagtagcttgtctctaccaaggctggagattt 182
|||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 324 ctgaattcacttttttttttcctgtcttgagtagcttgtctctaccaaggctgaagattt 383
Query: 183 cattctcttgagtagaatgaaacagttttcccttaatgttctgtcagacagacaagaagt 242
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cattctcttgagtagaatgaaccagttttcccttaatgttctgtcagacagacaagaagt 443
Query: 243 tgctctggttggaggctcggggttggtcctagtagacagcaacttcagggaaggagtcag 302
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 444 tgctctggttggaggctcggggttggttctagtagacagcaacttcagggaaggagtcag 503
Query: 303 gagagccagaatgggatgctcagcatgggtgacca-aaatgccaggcgccccacgagcag 361
||||||||||||||||||||||| ||||||||||| ||| | ||||||||||| ||||||
Sbjct: 504 gagagccagaatgggatgctcagtatgggtgaccacaaa-gtcaggcgccccaggagcag 562
Query: 362 agattcagtccagtcctgtgaacagtggggacttgtctaataaaatgctaactcctgggg 421
|||||| ||||| ||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 563 agattccgtccattcctgtgaacagtggggacacgtctaataaaatgctaactccggggg 622
Query: 422 ccctgggcaaagggaaagggcttggattgctagtctgccctatagcgtggaagctttgag 481
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ccctggacaaagggaaagggcttggattgctagtctgccctatagcgtggaagctttgag 682
Query: 482 gagagtgaaagcagctgctggctgggccagtgggcttggcatccgtgggccacacaaatg 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gagagtgaaagcagctgctggctgggccagtgggcttggcatccgtgggccacacaaatg 742
Query: 542 ctggaggaagaggggcagcccagactcggtgccctgaggtctgtccctt 590
||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 743 ctggaggaagaggggcagcccaggctcggcgccctgaggtctgtccctt 791
Score = 108 bits (56), Expect = 9e-28
Identities = 59/60 (98%)
Strand = Plus / Minus
Query: 4 ggaattctgggatacaaagtgcagcatctctttaactactccacctatcgatttagcctg 63
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976 ggaattctgggatagaaagtgcagcatctctttaactactccacctatcgatttagcctg 917
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 590
Length of database: 991
Length adjustment: 10
Effective length of query: 580
Effective length of database: 981
Effective search space: 568980
Effective search space used: 568980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no135_c09.g1 MSMg01no135_c09.g1 CHROMAT_FILE:
MSMg01no135_c09.g1 PHD_FILE: MSMg01no135_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:12 2005
(631 letters)
>mm_chr12_33752222_33753256
Length = 1035
Score = 1062 bits (549), Expect = 0.0
Identities = 607/637 (95%), Gaps = 21/637 (3%)
Strand = Plus / Minus
Query: 1 taactttcccttgttgtatacagtatttcctcatttctccctcgaagaacttcagaatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 taactttcccttgttgtatacagtatttcctcatttctccctcgaagaacttcagaatgt 752
Query: 61 ctgcaaatggcaccctcttctccaccacagaactggactttgaagcagggcacaagaggt 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 751 ctgcaaatggcaccctcttctctaccacagaactggactttgaagcagggcacaagaggt 692
Query: 121 aggcttgccaacgaccttctatccctgaggtatggctatccctgaggtacggcta----t 176
||||||||||||||||||| ||||||||||||||||||| || |
Sbjct: 691 aggcttgccaacgaccttc--------------ggctatccctgaggtacggttatccct 646
Query: 177 tcaaaactcaagg-aagatgcagaggcgacagggtgctgggttcctgagaacctggggga 235
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 tcaaaactc-aggtaagatgcagaggcgacagggtgctgggttcctgagaacctggggga 587
Query: 236 tggttcagcttcaggagtctgaaaaccttggccagacatacgtggaacaatggagggcat 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 tggttcagcttcaggagtctgaaaaccttggccagacatacgtggaacaatggagggcat 527
Query: 296 tcccagaactggggaccaggagaaggagggtagtgtctggggccgcaaaggcagcaagcg 355
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
Sbjct: 526 tcccagaactggggaccaggagaaggagggtagtgtctggggctgcaaaggcagcgaggg 467
Query: 356 taactagaaagcacctgaagagaggccgggctttgagatggaggccacaggccttgggaa 415
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 466 taactagaaagcacctgaagagaggccgggctttgagacggaggccacaggccttgggaa 407
Query: 416 aaccaggagaggctcctagctctaagtcaagagaagtagatagagtagttactgaggatg 475
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aaccaggtgaggctcctagctctaagtcaagagaagtagatagagtagttactgaggatg 347
Query: 476 gagtataggtcaatggcc-ggcgtttacctggtgtacgggaggccctggcttccatagcc 534
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gagtataggtcaatggccgggcgtttacctggtgtacgggaggccctggcttccatagcc 287
Query: 535 agcacctcaagcgagtgaatgaataaaatgggagccccctttccttgagagtggaacagg 594
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 agcacctcaaacaagtgaatgaataaaatgggagccccctttccttgagagtggaacagg 227
Query: 595 ccgatggcagggacattgtaaaggcagaggcttggct 631
|||||||||||||||||||||||||||||||||||||
Sbjct: 226 ccgatggcagggacattgtaaaggcagaggcttggct 190
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1035
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1025
Effective search space: 636525
Effective search space used: 636525
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
