MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-138L07
Chromosome	12 (Build37)
Map Location	80,252,159 - 80,252,664
singlet/doublet	singlet
Overlap gene	Arg2
Upstream gene	EG626215, Gphn, 4921509E07Rik, Mpp5, Atp6v1d, LOC100041878, Eif2s1, Plek2, 6330442E10Rik, Plekhh1, Pigh, LOC666722
Downstream gene	Vti1b, Rdh11, Rdh12, Zfyve26, Rad51l1, LOC100041968, LOC435309, LOC100041674, LOC666754, Zfp36l1
Link	Open Mouse BAC browser

Click to get alignment info.

name	EG626215 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:626215 MGI:3645257
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 1 Protein

name	Gphn (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:268566 MGI:109602
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4921509E07Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70897 MGI:1918147
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mpp5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56217 MGI:1927339
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Atp6v1d (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73834 MGI:1921084
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041878 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041878
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 4 ESTs

name	Eif2s1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13665 MGI:95299
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Plek2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27260 MGI:1351466
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	6330442E10Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:268567 MGI:2444389
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Plekhh1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:211945 MGI:2144989
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 155 ESTs, 2 Proteins

name	Pigh (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:110417 MGI:99463
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666722 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666722
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Arg2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11847 MGI:1330806
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Vti1b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:53612 MGI:1855688
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rdh11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17252 MGI:102581
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rdh12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:77974 MGI:1925224
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zfyve26 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:211978 MGI:1924767
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rad51l1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19363 MGI:1099436
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041968 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041968
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs

name	LOC435309 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:435309
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	LOC100041674 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041674
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	LOC666754 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666754
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Zfp36l1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12192 MGI:107946
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG626215 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94392976 GeneID:626215 MGI:3645257
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 1 Protein product : predicted gene, EG626215 transcript_id : XM_890796.2

name	Gphn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142350410 GeneID:268566 MGI:109602
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gephyrin transcript_id : NM_172952.2

name	4921509E07Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802769 GeneID:70897 MGI:1918147
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4921509E07 gene transcript_id : NM_027597.3

name	Mpp5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:9625022 GeneID:56217 MGI:1927339
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5) transcript_id : NM_019579.1

name	Atp6v1d (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:80861456 GeneID:73834 MGI:1921084
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATPase, H+ transporting, lysosomal V1 subunit D transcript_id : NM_023721.2

name	LOC100041878 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149263331 GeneID:100041878
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 4 ESTs product : hypothetical protein LOC100041878 transcript_id : XM_001477319.1

name	Eif2s1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142386277 GeneID:13665 MGI:95299
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : eukaryotic translation initiation factor 2, subunit 1 alpha transcript_id : NM_026114.3

name	Plek2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803038 GeneID:27260 MGI:1351466
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : pleckstrin 2 transcript_id : NM_013738.2

name	6330442E10Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46048373 GeneID:268567 MGI:2444389
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 6330442E10 gene transcript_id : NM_178745.3

name	Plekhh1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149263319 GeneID:211945 MGI:2144989
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 155 ESTs, 2 Proteins product : pleckstrin homology domain containing, family H (with MyTH4 domain) member 1, transcript variant 1 transcript_id : XM_126961.8

name	Pigh (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:76253935 GeneID:110417 MGI:99463
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphatidylinositol glycan anchor biosynthesis, class H transcript_id : NM_029988.2

name	Arg2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6753109 GeneID:11847 MGI:1330806
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : arginase type II transcript_id : NM_009705.1

name	Vti1b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31980616 GeneID:53612 MGI:1855688
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : vesicle transport through interaction with t-SNAREs 1B homolog transcript_id : NM_016800.2

name	Rdh11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142350792 GeneID:17252 MGI:102581
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : retinol dehydrogenase 11 transcript_id : NM_021557.3

name	Rdh12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142357436 GeneID:77974 MGI:1925224
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : retinol dehydrogenase 12 transcript_id : NM_030017.2

name	Zfyve26 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:112818583 GeneID:211978 MGI:1924767
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger, FYVE domain containing 26 transcript_id : NM_001008550.1

name	Rad51l1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142381729 GeneID:19363 MGI:1099436
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RAD51-like 1 (S. cerevisiae) transcript_id : NM_009014.3

name	LOC100041968 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149263335 GeneID:100041968
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs product : hypothetical protein LOC100041968 transcript_id : XM_001477600.1

name	LOC100041674 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149263322 GeneID:100041674
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : similar to Ubtf protein transcript_id : XM_001476819.1

name	Zfp36l1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802021 GeneID:12192 MGI:107946
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger protein 36, C3H type-like 1 transcript_id : NM_007564.3

name	EG626215 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94392977 GeneID:626215 MGI:3645257
definition	codon_start : 1 product : hypothetical protein protein_id : XP_895889.2

name	Gphn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370466 CCDS:CCDS26000.1 GeneID:268566 MGI:109602
definition	GO_component : GO:0019897 - extrinsic to plasma membrane [Evidence TAS] GO_function : GO:0008092 - cytoskeletal protein binding [Evidence TAS] GO_process : GO:0007529 - establishment of synaptic specificity at neuromuscular junction [Evidence IMP] codon_start : 1 exception : mismatches in translation product : gephyrin protein_id : NP_766540.1

name	4921509E07Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31442418 GeneID:70897 MGI:1918147
definition	codon_start : 1 product : hypothetical protein LOC70897 protein_id : NP_081873.2

name	Mpp5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9625023 CCDS:CCDS26001.1 GeneID:56217 MGI:1927339
definition	GO_component : GO:0016021 - integral to membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA]; GO:0005923 - tight junction [Evidence IEA] GO_function : GO:0004385 - guanylate kinase activity [Evidence ISS]; GO:0005515 - protein binding [Evidence IEA] codon_start : 1 note : protein associated with Lin-7 product : membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 5) protein_id : NP_062525.1

name	Atp6v1d (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:12963799 CCDS:CCDS26002.1 GeneID:73834 MGI:1921084
definition	GO_component : GO:0016469 - proton-transporting two-sector ATPase complex [Evidence IEA] GO_function : GO:0015078 - hydrogen ion transporter activity [Evidence IEA]; GO:0046933 - hydrogen-transporting ATP synthase activity, rotational mechanism [Evidence IEA]; GO:0046961 - hydrogen-transporting ATPase activity, rotational mechanism [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA] GO_process : GO:0006754 - ATP biosynthesis [Evidence IEA]; GO:0015986 - ATP synthesis coupled proton transport [Evidence IEA]; GO:0006811 - ion transport [Evidence IEA]; GO:0015992 - proton transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : ATPase, H+ transporting lysosomal (vacuolar proton pump); V-ATPase subunit D; lysosomal 34kDa; ATPase, H+ transporting, lysosomal 34kD, V1 subunit D product : ATPase, H+ transporting, V1 subunit D protein_id : NP_076210.1

name	LOC100041878 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149263332 GeneID:100041878
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477369.1

name	Eif2s1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385624 CCDS:CCDS26003.1 GeneID:13665 MGI:95299
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005850 - eukaryotic translation initiation factor 2 complex [Evidence IEA]; GO:0005851 - eukaryotic translation initiation factor 2B complex [Evidence ISS]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003723 - RNA binding [Evidence IEA]; GO:0003743 - translation initiation factor activity [Evidence ISS] [Evidence IEA] GO_process : GO:0045946 - positive regulation of translation [Evidence ISS]; GO:0006412 - protein biosynthesis [Evidence IDA]; GO:0006417 - regulation of protein biosynthesis [Evidence IEA]; GO:0006445 - regulation of translation [Evidence IEA]; GO:0043558 - regulation of translation initiation in response to stress [Evidence IDA]; GO:0043037 - translation [Evidence IDA] codon_start : 1 note : eukaryotic translation initiation factor 2A product : eukaryotic translation initiation factor 2, subunit 1 alpha protein_id : NP_080390.1

name	Plek2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305393 CCDS:CCDS26004.1 GeneID:27260 MGI:1351466
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA] codon_start : 1 product : pleckstrin 2 protein_id : NP_038766.1

name	6330442E10Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30520191 CCDS:CCDS26005.1 GeneID:268567 MGI:2444389
definition	codon_start : 1 product : hypothetical protein LOC268567 protein_id : NP_848860.1

name	Plekhh1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149263320 GeneID:211945 MGI:2144989
definition	codon_start : 1 product : pleckstrin homology domain containing, family H (with MyTH4 domain) member 1 isoform 1 protein_id : XP_126961.7

name	Pigh (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:41872422 CCDS:CCDS26006.1 GeneID:110417 MGI:99463
definition	codon_start : 1 note : phosphatidylinositol glycan, class H product : phosphatidylinositol glycan anchor biosynthesis, class H protein_id : NP_084264.1

name	Arg2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753110 CCDS:CCDS26007.1 GeneID:11847 MGI:1330806
definition	GO_component : GO:0005739 - mitochondrion [Evidence ISS] [Evidence IEA] GO_function : GO:0004053 - arginase activity [Evidence IEA] [Evidence ISS]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016813 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines [Evidence IEA]; GO:0030145 - manganese ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS] GO_process : GO:0006527 - arginine catabolism [Evidence IEA]; GO:0006525 - arginine metabolism [Evidence IEA]; GO:0006941 - striated muscle contraction [Evidence IMP]; GO:0000050 - urea cycle [Evidence IEA] codon_start : 1 function : conversion of arginine to ornithine and urea product : arginase type II protein_id : NP_033835.1

name	Vti1b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31980617 CCDS:CCDS26008.1 GeneID:53612 MGI:1855688
definition	GO_component : GO:0005794 - Golgi apparatus [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006886 - intracellular protein transport [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : Soluble N-ethylmaleimide-sensitive factor-attachment protein receptor; A novel SNARE product : vesicle transport through interaction with t-SNAREs 1B homolog protein_id : NP_058080.2

name	Rdh11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19482172 GeneID:17252 MGI:102581
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0005622 - intracellular [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004745 - retinol dehydrogenase activity [Evidence ISS] GO_process : GO:0045494 - photoreceptor maintenance [Evidence ISS]; GO:0042572 - retinol metabolism [Evidence ISS] codon_start : 1 note : short-chain aldehyde dehydrogenase; cell line MC/9.IL4 derived transcript 1; all-trans and 9-cis; androgen-regulated short-chain dehydrogenase/reductase 1; ubiquitously expressing product : short-chain dehydrogenase/reductase 1 protein_id : NP_067532.2

name	Rdh12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037513 CCDS:CCDS26009.1 GeneID:77974 MGI:1925224
definition	GO_component : GO:0005622 - intracellular [Evidence ISS] GO_function : GO:0004745 - retinol dehydrogenase activity [Evidence ISS] GO_process : GO:0045494 - photoreceptor maintenance [Evidence ISS]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0042572 - retinol metabolism [Evidence ISS]; GO:0007601 - visual perception [Evidence IEA] codon_start : 1 product : retinol dehydrogenase 12 protein_id : NP_084293.1

name	Zfyve26 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:112818584 GeneID:211978 MGI:1924767
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : zinc finger, FYVE domain containing 26 protein_id : NP_001008550.1

name	Rad51l1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982072 GeneID:19363 MGI:1099436
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0008094 - DNA-dependent ATPase activity [Evidence IEA]; GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA] GO_process : GO:0006259 - DNA metabolism [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006974 - response to DNA damage stimulus [Evidence IEA] codon_start : 1 product : RAD51-like 1 protein_id : NP_033040.2

name	LOC100041968 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149263336 GeneID:100041968
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477650.1

name	LOC100041674 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149263323 GeneID:100041674
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001476869.1

name	Zfp36l1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680808 CCDS:CCDS26010.1 GeneID:12192 MGI:107946
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005829 - cytosol [Evidence ISS]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003729 - mRNA binding [Evidence ISS]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006402 - mRNA catabolism [Evidence ISS]; GO:0043488 - regulation of mRNA stability [Evidence ISS] codon_start : 1 note : butyrate response factor 1 product : zinc finger protein 36, C3H type-like 1 protein_id : NP_031590.1

name	LOC666722 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666722
definition	number : 1 pseudo : _no_value

name	LOC435309 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:435309
definition	number : 1 pseudo : _no_value

name	LOC666754 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666754
definition	number : 1 pseudo : _no_value

clone name	MSMg01-301N12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-269C13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-289O24
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-398L11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-156D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482K04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-271A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-277H03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-362B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-370M03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-416H14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-548K01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-057L20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-061N13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-528L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-382E16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-115A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-102G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-120C13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-412O19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-506B20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-500E13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-166I08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-479A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-379F05
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-410O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-488D19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-237K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-519N20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-060O17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-337K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-421K20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-280B06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-395I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-369E06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-347C16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-110M14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-317D24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-138L07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-279O01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-546B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-180F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-262I06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-530L10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-094B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-488B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542O11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-295L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325P02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-278J13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-156D01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065N15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-180C10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-469N12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-112P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-484O05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-142O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-266M20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-525O09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-105A09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502F16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-335M03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-237E10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-047B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-293I14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-158D22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-318G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-477N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329P13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-100E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-390M12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-348F15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-406E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-149I09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-315L08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-365C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-347E23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-529M09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-275C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-373B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-289C15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-138N10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-346I13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-233O20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-136I12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-360J12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525J03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-458I13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-083J01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-087F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-186B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-371J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288K09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-171O04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-106D10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-349D09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-039P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284L16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-208O19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-266E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251B15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110K17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-337L19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-254H13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-269F13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-109N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326B08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-299A11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131P07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-114I01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-004F10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-004O23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-093D07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-225G02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-073N20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-057O01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-038J22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-048L01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-048B11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-116L22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-170G23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068D08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-026J19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110A05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-130M18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-026K18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-130N12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-345F12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-055D19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-064O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341H10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-085L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303H01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276G02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-142I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252L14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-065C03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-328G08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-228N05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-338H24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169A04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-029J10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-137H04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-090F03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-124K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313K17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-052O14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321N23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325E09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-292H22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-300J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075N01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110M12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316E13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-236O02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-323D23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-050H12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-211O07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-318J14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080L11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-103M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210N23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-226D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344J24
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-138L07.T7 (MSMg01no138_l07.b1)	MSMg01-138L07.TJ (MSMg01no138_l07.g1)
ACC	AG344305	AG344306
length	1,557	708
length of high quality (start - end)	---	504 (82 - 585)
definition	CHROMAT_FILE: MSMg01no138_l07.b1 PHD_FILE: MSMg01no138_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:49 2005	CHROMAT_FILE: MSMg01no138_l07.g1 PHD_FILE: MSMg01no138_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:49 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	GAGATTATAGAGAGGCAGAGTAANAGAGTAGAGTGTGGGTGAGGTGAAGG TGNNACGAAATTTATTNATATCTACTAATATACCNATCATAATAGCTGCA GTGCTGGCTGTGTGCGGCTCTCCTGATAGTATGCGACACCCTCGCGCAAT GAGACGAAGCGAACAGAACGAGCGNCATGCGCCCCGTCTCGCTCCTGNGA GTGATAATCTACGTCTATCTATACAGTTCATACTCTAATTCATCGTATAG CACGATGATGCAGGACCGGTGCAGTACTCGATGTTGTACTGTATACGGCA GCAGCTGCACTAGTANCCCACACGCGATACTACGCGACTGTACGATAGAC AGCTCGCGGACCGAGGATGGATAGAGTAGGATTCGCACGTGCCACTCCGC CCATATGTCCTGTGTGGTGTCTCATCGCTTCCACTATATATCGCACACAC CACACATCAACAATATGATCACGTATATATATCCGCACAGCACACACACT GTTGTCTTCTCGTCGCCTCGCCTCGTGTCTCAACCTTATACAGCAGTGTT ACACAACAAATCAATTANGCCAGTTACCATCCAACGCTCATCACTACCGT ATGTCCACCACACACCTATCCTATGCTTGTTCTACTCCACAGTCTCCTGC CTGCTTTCGTCGTCCCAGTNGACCAGGCCTGTANGTGTATAGAGCGCGGG NGACATGCGGTGGTGGCATTGCGAGATGATAATGCGCAGGNGCTGCAGTA ACACGCACATCGGCACGCATGNCGTNCACACGGAAGGACGAGTACTCATG CAGAGTCGCACGTATACGGAGTCCCCTCGTTAGTCCTCGAGAGCGCAACG AACACGTACGCAGTATGNCGCGAGTCACATCTATGAATAGTATCCTCGAT TTGATCATGCGACCTCGCAAGAGATGTGAGACACACCTACGAACCGTCGA TACATCACTATAGAAGACGATGTANTGGTNAGTCACGCCNGCACGTAAGA TGACCTCGCTACACTATATATATCAGNAGGATACTGATCTACACACCATG ATGCCAGTACACATAATATAGTACTCAGGCAGTGAGTATATGCATCAATN AGACGTCGCGCGAGTTGCGCGCGGACGACAGCGATANTGTATGATCNGTG TTTNGACGACCGACGACAACGAGCGCAGTTGTTAGCGGCTGCTGTATTCA TAGCTACGAAGGAACACACACGATTGACGAATATATAGCACTANCAGCTA CTCGCGTACTNCTCTATACCACACGCACGCAACTATATACCGTGATATTC GATCTCTCGATATATCGCGCGCACATCGCTACTATATGACGTGAACAGCA CGACCGCTATGCGNTATGATAATAATCTACTCACAACGCACAGAGACGCG NTATACTGTATCGCATATTCGATATGACAAGCAACGGCACGCGNGTTCNG ACCACCGCCTCTGTGATGCGTGACGACTGAGTCGCGCNAGCACACATAGA TATNCATGTGCGTACGTCCNGCACACACACATGTGATACAGCAACGNCNT AANTCTC	CTTNNNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACTTCTCAAGTAAAAGCA AAACATGTCTATGTATTTTCAAATCGTTTAGAAAGGCATAGGATCAATCA TAAATCATATTCTTCTAGATTTGGGAGGGGTAAAGTCAGTGGCCCATCCT GCTTCTCATAAATTTGTTTTCGATTTCGTGACTTTTGATGAGAAGCCTTC ATCACTGCTCCAGTGGTCCTGTTCTTCCTAACTTCGTTACTGCTTCATCT GAGTTTTGTATTAAGCATAAAAACACATGGTAGTCAGACTCATTTTCCCA ACAATGGGGCTTCTCTTTTGGGTGGTCAATATCAGAACTGCTGTCTCGTC ATTCTCTAAGCTGCCAAGACATTAGTTGTTTGCTACTAGGATGCTGATGT TTGGTTTTAGTCATGGGATACCTGCACTCAAGTTGGAATTGGAATTTCGC AGACTTTAAACTGGATTATGTTCATTCAACAATTATAACCTAATGAAGCT AACTTAATTAATGATGGAAGTGAAGCATTCCCGAGAGGCATTAATACCCT ACGAAACCCAGAAAAATGCACTGGAGGTTTTCTGAAACAGGCAGAACAAA TGGCAGTATCTTAAAGTACTATGTAAGAAGTTAATATGCCAATCTCCGTC ACTTCTAG
quality values	Open. Hide. 6 6 8 6 6 6 6 8 8 8 9 10 8 8 8 8 8 8 6 6 6 6 3 0 3 8 8 6 6 6 8 8 8 8 8 21 21 14 6 6 6 8 9 9 8 8 8 8 13 15 10 3 0 0 3 6 6 8 7 6 6 8 7 6 9 3 0 3 10 10 10 15 11 10 13 8 8 8 8 8 6 8 8 3 0 3 6 6 6 6 10 10 9 10 8 10 8 6 6 6 8 8 8 10 10 10 13 10 10 10 10 11 11 13 8 10 8 8 8 8 6 6 7 7 8 8 10 15 8 6 6 10 8 8 6 6 6 6 6 6 6 7 6 10 8 7 6 8 8 9 10 10 10 6 6 6 6 8 8 6 6 7 7 8 6 6 8 8 8 6 6 6 6 3 0 3 6 6 6 6 6 6 7 10 8 8 6 8 8 8 10 9 10 10 10 10 3 0 3 10 8 6 6 6 8 8 8 6 6 6 6 6 7 9 10 10 10 13 8 8 8 8 8 8 8 6 6 6 8 13 9 10 10 11 8 8 8 8 8 6 6 6 6 6 6 7 10 10 8 8 6 8 6 6 8 6 6 6 6 6 6 8 6 8 6 6 8 8 10 10 6 8 6 6 6 8 10 9 9 9 9 9 9 9 9 9 11 11 12 12 14 11 11 11 10 10 8 8 8 8 8 7 7 6 7 8 8 8 6 6 6 6 10 10 3 0 3 6 6 6 8 8 11 8 8 6 6 6 6 6 6 6 6 6 6 8 8 8 8 8 8 10 9 8 8 8 6 8 6 8 8 8 7 7 7 10 8 8 6 6 6 8 8 6 6 6 6 8 6 6 6 6 6 6 6 7 8 8 11 11 8 8 8 8 8 9 10 10 9 9 9 6 8 8 6 6 6 8 8 6 10 6 7 8 8 10 8 8 7 6 6 6 6 6 6 6 6 8 6 6 7 6 8 6 6 6 6 6 6 8 9 9 9 9 8 8 11 8 8 7 7 9 9 8 8 8 11 8 6 6 6 6 6 8 8 8 8 8 8 8 6 8 8 8 8 6 8 8 8 8 10 10 9 9 9 9 8 10 10 6 6 6 8 6 8 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 7 10 6 8 8 10 10 6 6 6 6 6 8 9 7 10 8 8 8 9 10 10 8 8 6 6 6 6 6 6 6 6 6 7 7 10 8 8 8 8 8 8 8 10 8 9 9 10 11 10 8 8 8 8 8 10 8 8 8 9 8 10 10 6 6 6 3 0 3 6 8 6 6 6 6 10 10 10 9 6 6 7 6 6 6 6 6 10 8 8 8 8 8 10 10 10 10 10 10 10 8 6 6 7 10 8 6 8 10 8 8 8 8 9 9 9 8 8 7 8 8 8 12 11 11 12 11 9 9 10 10 10 9 9 12 8 8 8 10 8 7 9 9 13 9 9 12 9 9 7 8 6 8 8 8 8 8 8 9 9 9 8 8 8 8 8 7 7 3 0 3 6 6 8 6 8 10 6 6 6 6 6 3 0 3 6 6 6 6 6 6 6 6 8 6 6 10 8 9 3 0 3 8 8 6 6 6 6 6 8 10 8 8 9 9 8 8 10 10 10 7 7 7 7 6 6 6 6 7 6 8 10 10 10 9 9 8 6 6 3 0 3 8 8 9 9 11 13 9 8 6 6 6 6 6 6 7 8 8 9 8 8 8 6 6 6 8 8 9 9 3 0 3 9 3 0 3 8 8 8 8 10 10 10 9 9 6 6 6 6 6 6 8 8 8 8 8 8 6 6 7 8 8 8 8 8 8 12 9 12 11 12 11 11 11 10 10 8 8 8 8 8 8 8 9 9 6 8 6 6 6 6 6 6 6 6 11 7 6 8 8 8 8 6 6 6 6 10 10 9 8 8 8 8 8 8 8 8 8 8 8 6 6 6 6 6 3 0 3 11 8 8 8 8 8 10 11 8 8 8 8 6 10 6 6 8 6 8 8 6 6 6 6 8 8 6 6 6 6 8 8 7 6 6 6 8 6 8 8 8 6 6 7 6 6 6 6 6 6 8 8 7 6 8 8 8 6 6 6 6 7 7 8 10 10 6 6 6 8 7 7 10 6 6 6 6 8 6 8 8 11 15 10 10 9 7 7 7 7 6 6 6 6 8 8 10 10 12 12 9 9 9 13 3 0 3 8 8 3 0 3 6 6 6 6 6 6 6 3 0 3 8 10 8 11 10 8 8 8 8 8 9 7 8 8 8 8 8 8 10 8 6 6 8 6 10 14 14 10 11 8 6 6 6 6 3 0 3 9 9 6 6 6 6 8 8 8 8 8 8 10 10 8 8 8 8 8 8 8 8 8 10 15 8 8 8 8 10 8 8 8 8 10 11 11 8 6 6 6 6 6 8 9 6 6 8 8 8 8 8 10 8 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 3 0 3 6 6 8 6 6 6 8 8 10 8 8 8 8 8 8 8 8 8 8 10 10 10 9 9 8 8 8 9 9 9 12 10 10 10 3 0 3 18 12 13 13 9 9 9 3 0 3 6 6 6 6 3 0 3 8 6 6 8 7 7 6 7 6 8 8 8 8 8 10 7 6 6 6 8 8 6 6 8 8 10 10 10 10 8 8 10 10 8 8 8 8 8 10 10 10 10 10 10 10 8 8 8 8 10 9 10 10 10 8 8 6 6 6 6 6 8 6 7 7 7 6 6 6 6 7 8 10 8 8 8 7 7 7 9 9 9 8 8 8 8 8 3 0 3 10 9 9 9 8 8 10 8 10 8 6 6 8 8 3 0 3 11 13 8 8 6 7 6 6 8 8 8 7 6 6 6 6 6 6 6 6 6 6 11 7 8 8 6 6 6 6 6 6 6 8 9 9 9 10 11 10 10 10 10 10 8 9 9 9 10 13 8 8 6 6 6 8 8 6 6 6 6 6 6 6 8 8 6 6 6 6 8 8 9 9 6 6 8 6 8 8 8 8 8 8 8 8 8 8 6 6 6 6 7 8 11 8 10 6 6 6 3 0 3 8 8 8 9 14 9 8 9 8 10 8 9 9 10 8 8 8 8 6 6 6 6 6 8 11 7 7 7 7 7 7 9 9 10 3 0 3 6 6 6 6 8 10 10 11 11 8 6 6 6 6 6 8 6 6 6 6 8 8 8 6 8 8 9 6 6 6 7 10 7 8 8 8 13 10 8 8 3 0 3 8 8 3 0 3 6 6 6 7 7 7 6 6 6 6 7 10 8 8 8 8 11 10 16 10 9 9 9 7 8 6 6 6 6 6 6 6 6 6 8 8 3 0 3 6 8 10 8 6 6 6 6 6 6 6 8 8 3 0 3 8 8 8 8 7 7 7 8 8 6 6 6 6 3 0 3 6 6 8 12 8 10 8 8 8 8 8 8 10 9 9 11 8 8 8 6 6 6 8 6 3 0 3 0 3 9 3 0 3 7 8 7	Open. Hide. 6 6 3 0 0 0 3 6 6 7 11 13 10 8 8 8 8 17 3 0 3 8 11 15 28 30 30 41 42 37 39 50 50 42 47 33 29 20 9 7 7 7 7 8 8 11 16 17 19 16 21 12 15 26 27 23 14 14 14 26 22 33 33 26 23 10 8 8 8 8 9 11 11 11 18 13 21 28 29 31 31 31 36 35 35 57 35 35 28 33 33 37 47 53 53 53 53 53 53 53 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 50 47 47 43 50 50 50 50 50 50 50 57 57 57 57 57 68 68 68 68 68 68 50 50 50 50 50 50 68 68 68 68 68 68 68 50 50 50 51 51 50 68 68 68 68 68 68 68 68 68 68 68 68 57 59 57 57 57 57 57 51 50 50 50 50 50 57 57 68 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 59 57 57 57 68 68 68 57 57 57 57 57 57 68 68 68 68 57 57 57 57 57 57 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 46 44 42 35 35 35 31 31 35 44 59 59 59 57 57 57 68 68 68 68 68 57 57 47 47 47 50 50 50 54 54 54 54 54 59 59 59 59 68 68 68 68 68 68 59 59 54 43 43 43 43 36 32 32 28 28 22 22 17 30 30 43 39 47 47 47 48 48 48 42 41 41 33 33 28 30 25 30 35 37 37 37 30 31 35 39 39 30 30 25 22 22 19 19 18 17 15 23 34 41 47 47 47 59 47 50 50 47 35 35 28 28 23 36 37 34 34 34 34 43 57 48 48 48 57 48 57 57 48 48 53 57 57 53 53 36 33 33 33 33 33 37 39 39 41 37 37 44 44 59 47 41 41 40 48 48 41 46 41 37 30 30 33 31 31 38 39 39 39 34 34 40 37 37 37 32 32 35 59 59 59 59 46 41 41 41 43 41 41 39 39 43 41 46 46 46 46 41 41 22 23 10 10 10 16 23 28 23 37 39 39 41 41 41 37 44 43 47 47 46 46 39 30 25 25 22 13 17 12 15 11 15 23 37 37 39 39 39 43 41 37 23 28 28 29 29 30 29 24 33 28 28 28 39 23 23 11 11 11 16 16 17 13 10 10 11 17 12 16 14 19 14 18 21 23 23 10 8 6 6 6 7 12 22 12 11 9 9 8 8 16 13 10 10 24 19 28 11 13 10 9 8 8 10 18 28 37 15 10 10 8 8 8 10 10 13 18 26 17 14 17 18 23 23 28 23 22 18 25 19 21 14 15 18 11 11 11 12 12 25 27 35 28 28 20 19 19 13 10 8 8 8 8 10 20 22 23 19 16 23 23 30 28 19 15 21 15 15 15 22 18 29 24 25 11 11 11 16 12 10 11 11 11

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no138_l07.g1 MSMg01no138_l07.g1 CHROMAT_FILE:
MSMg01no138_l07.g1 PHD_FILE: MSMg01no138_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:49 2005
         (504 letters)



>mm_chr12_80251958_80252866
          Length = 909

 Score =  920 bits (476), Expect = 0.0
 Identities = 497/506 (98%), Gaps = 5/506 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   acttctcaagtaaaagcaaaacatgtctatgtattttcaaatcgtttagaaaggcatagg 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 acttctcaagtaaaagcaaaacatgtctatgtattttcaaatcgtttagaaaggcatagg 261

                                                                       
Query: 62  atcaatcataaatcatattcttctagatttgggaggggtaaagtcagtggcccatcctgc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atcaatcataaatcatattcttctagatttgggaggggtaaagtcagtggcccatcctgc 321

                                                                       
Query: 122 ttctcataaatttgttttcgatttcgtgacttttgatgagaagccttcatcactgctcca 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttctcataaatttgttttcgatttcgtgacttttgatgagaagccttcatcactgctcca 381

                                                                       
Query: 182 gtggtcctgttcttcctaacttcgttactgcttcatctgagttttgtattaagcataaaa 241
           ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 382 gtggtcctgttcttcctaacttcattactgcttcatctgagttctgtattaagcataaaa 441

                                                                       
Query: 242 acacatggtagtcagactcattttcccaacaatggggcttctcttttgggtggtcaatat 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 acacatggtagtcagactcattttcccaacaatggggcttctcttttgggtggtcaatat 501

                                                                       
Query: 302 cagaactgctgtctcgtcattctctaagctgccaagacattagttgtttgctactaggat 361
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cagaactgctgtctcatcattctctaagctgccaagacattagttgtttgctactaggat 561

                                                                       
Query: 362 gctgatgtttggttttagtcatgggatacctgcactcaagttggaattggaat-t----t 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| |    |
Sbjct: 562 gctgatgtttggttttagtcatgggatacctgcactcaagttggaattggaatataatct 621

                                                                       
Query: 417 cgcagactttaaactggattatgttcattcaacaattataacctaatgaagctaacttaa 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 cgcagactttaaactggattatgttcattcaacaattataacctaatgaagctaacttaa 681

                                     
Query: 477 ttaatgatggaagtgaagcattcccg 502
           |||||||| |||||||||||||||||
Sbjct: 682 ttaatgatagaagtgaagcattcccg 707


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 909
Length adjustment: 10
Effective length of query: 494
Effective length of database: 899
Effective search space:   444106
Effective search space used:   444106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information